BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950010

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02800.1 | Symbols:  | Protein kinase superfamily protein | ...   207    2e-53


> AT5G02800.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:635228-637503 REVERSE LENGTH=1583
Length=1583

 Score =  207 bits (112),  Expect = 2e-53
 Identities = 129/137 (94%), Gaps = 2/137 (1%)
 Strand=Plus/Plus

Query  1    GAAGAAGAAGAAGATC--GAGAAGCTTAATGGGTTGGATCCCGTGTTCTGGGAAATCGAG  58
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  GAAGAAGAAGAAGATCGTGAGAAGCTTAATGGGTTGGATCCCGTGTTCTGGGAAATCGAG  161

Query  59   CGGGAGGACTAAGACAAGGAGGAACGCTGACCAAAAACTCAACAGGAAGTCTTCTGATTG  118
             ||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct  162  TGGGAGGAATAAGACAAGGAGGAACGGTGACCACAAACTCGACAGGAAGTCTTCTGATTG  221

Query  119  TTCTGTCTCTACTTCAG  135
            |||||| ||||||||||
Sbjct  222  TTCTGTGTCTACTTCAG  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9400069063


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5