BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950012
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53930.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2169 0.0
> AT5G53930.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21894232-21896427 REVERSE LENGTH=1889
Length=1889
Score = 2169 bits (1174), Expect = 0.0
Identities = 1493/1639 (91%), Gaps = 53/1639 (3%)
Strand=Plus/Plus
Query 17 TACAATGGGGAAATCTTCATCGTCCTCAAAGATAATCAAACATTCCAAAGATTCGTCTAA 76
||||||||| ||||||||||||||||||||| || | | | |||||||||||||||
Sbjct 141 TACAATGGGCAAATCTTCATCGTCCTCAAAG---AT---A-A-T-CAAAGATTCGTCTAA 191
Query 77 TAAGTGGCGATCGGTgaagaagaagaagaagagtaagagaaacaaatcaaagaagaTTCG 136
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TAAGTTGCGATCGGT---GAAGAAGAAGAAGAGTAAGAGAAACAAATCAAAGAAGATTCG 248
Query 137 TCGGATT-AA-A-GAGAGTGAATCTAGTGGTTCTGATTCTTCTTTGTATTCTAGTTCAGA 193
||||||| || | ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 249 TCGGATTAAAGATGAGAGTGAATCAAGTGGTTCAGATTCCTCTTTGTATTCTAGTTCAGA 308
Query 194 AGATGATTACAGGAGAAAGAAGAAGCGTAGATCTAAATTGAGCAAGAAGAGGTCACGGAA 253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 AGATGATTACAGGAGAAAGAAGAAGCGTAGATCTAAATTGAGTAAGAAGAGGTCACGGAA 368
Query 254 GAGGTACTCTAGTAGTGAGAGtgatgatgacgatgatgatgatgatTCTCGTCTTTTaaa 313
|||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||
Sbjct 369 GAGGTACTCTAGTAGTGAGAGTGATGATGA-TA-G-TGATGATGA---TCGTCTTTTAAA 422
Query 314 gaaaaagaaaagatcgaagaggaaagacgaatatgtagggaagaagaagaagaaagttgt 373
||||||||||||||| |||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 423 GAAAAAGAAAAGATCTAAGAGGAAGGATGAAAACGTAGGGAAGAAGAAGAAGAAAGTTGT 482
Query 374 tttaagaaagaaacgtaagagagaTTTGAGTTCTAGCTCGACTAGTAGTGAGCAGAGCGA 433
| |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 483 GTCAAGAAAGAGACGTAAGAGAGATTTGAGTTCAAGCTCTACAAGTAGTGAGCAGAGTGA 542
Query 434 TAATGACGGTAGTGAGA--G-TGATGGGAAGAGATGGTCTAGGGATAGAGGAAGAAGACT 490
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 543 TAATGACGGTAGTGAGAGTGATGATGGGAAGAGATGGTCTAGGGATAGAGGAAGAAGACT 602
Query 491 TGGTGAGGTTGATGATGCGCGGAGTAGAAGTAGAGATGGGTTGGAAGGAGAGAGTGAAGA 550
|||| ||||| | ||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 TGGTAAGGTTAAGGATTCCCGGAGTAGAAGTAGAGATGAGTTGGAAGGAGAGAGTGAAGA 662
Query 551 ACCTGATGAATGCTGGCAAGTGGAAGGTGAAGTTATACCTGAGAAGAATCCTAGAAGGCT 610
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 663 ACCTGATGAATGCTGGCAAGGGGAAGATGAAGTTATACCTGAGAAGAATCCTAGAAGGCT 722
Query 611 TAAATCGATTGTTGTTGTATCATATAGTTATGGCCATGATGAGAGCAAGGAAGAAGATGA 670
||||||||||||||||||||| |||| |||||| ||| |||||| ||||||||||||||
Sbjct 723 TAAATCGATTGTTGTTGTATCGTATAATTATGGGAATGGTGAGAGAAAGGAAGAAGATGA 782
Query 671 CCGAGATGTCTATATGACATGCGGTGGT---AATAGAGAGTTGGGACATAGTGAGGAATC 727
||| ||||||||||||||| |||||||| ||||||||||| ||| |||||||||| ||
Sbjct 783 CCGTGATGTCTATATGACACGCGGTGGTGGCAATAGAGAGTTAGGATATAGTGAGGACTC 842
Query 728 TGATGAGA-GAGATGGTGAAACTACCGTCTCCTATTCTAGAACTCGTGCTGATGACAACG 786
|||||||| | ||||||||| ||| | ||| |||||||||| |||||||||||||||||
Sbjct 843 TGATGAGATG-GATGGTGAATCTATTGACTCTTATTCTAGAATTCGTGCTGATGACAACG 901
Query 787 GACTT----AA-A-ACT--GT-TGGTTA-T-G-ATGAGTTTGGTGA-A-AG-TAATAGCA 831
|| || || | | | | | | | | | | ||||| | | | || ||||||
Sbjct 902 GATTTGGGGAATATAATAAATCT-GAAACTAGCA-AAGTTT-CTCATACAGACAATAGCT 958
Query 832 TGAAAGATGATAACCTGGAAGCCATTCTAAAGAAAAGAGCACTGGAGAATCTAAAAAGAT 891
||||||||||| | ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 959 TGAAAGATGATGATTTGGAAGCCATTCTAAAGAAAAGAGCTCTGGAGAATCTTAAAAGAT 1018
Query 892 TTCGTGGAGTGGCCCAAAAGAGTGGAATAGCTAAAAAAGAGGTGTCTTCTGTTTCAGAAG 951
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTCGTGGAGTGACCCAAAAGAGTGGAATAGCTAAAAAAGAGGTGTCTTCTGTTTCAGAAG 1078
Query 952 GAGAACCTCTGCAAATTGAATCTGAAAAAGTTGAGGAGTCACAAGACCATGGTCTCATGG 1011
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1079 GAGAACCTATGCAAATTGAATCTGAAAAAGTT---GAGTCACAAGACCATGATCTCATGG 1135
Query 1012 AGCAGAAGGTTTGTGATTCTGAGGTAAGCAAAGATCTCGAGACTTCAGAAAAGATTTTAC 1071
||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1136 AGCAGAAACTTTGTGATTCTGCTGTAAGCAAAGATCTTGAGAATTCAGAAAAGATTTTAC 1195
Query 1072 ATGTTGTTAATGTTAAGGAATCTGGAACAGCATTGGCTAATTCTGCCTCTCAAAAAGATC 1131
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 ATGTTATTAATGTTAAGGAATCTGGAACAGCATTGGCTAATTCTGCCTCTCAACAAGATC 1255
Query 1132 AGCAGTCTGGTGATACTGCCAAGGTTAAAGCTAGTACTGGTATTAGCTCTTGTTCAACGA 1191
|||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||| |
Sbjct 1256 AGCAGTCTGGTGATACTGCCAAGGTTAAAGTTAGTTCTGGTCTTAGCTCTTGTACAACCA 1315
Query 1192 AACGAAAGTTGGTTAGACCGGTATTGGGGAAAGATAGTTTAAATCTAGCTAGCAGGAAAG 1251
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 1316 AACGAAAGTTGGTTAGACCGGTATTGAGTAAAGATAGTTTAAATCTAGCTAGCAAGAAAG 1375
Query 1252 AAGTTAGTGGTAGCCAAGATGCTGAAGCTGAGAGCATCGGTGGCAGTACCATTGACAAGA 1311
||| |||||||||||||||||||||||| |||||||| | |||||||||| |||||||||
Sbjct 1376 AAGCTAGTGGTAGCCAAGATGCTGAAGCAGAGAGCATTGATGGCAGTACCGTTGACAAGA 1435
Query 1312 ATTGTTTAGAAAGTACTCTAGCTTTGGTAACAAAGAATGAAGGTGAACACATAGAACCAA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ATTGTTTAGAAAGTACTCTAGCTTTGGTAACAAAGAATGAAGGTGAACACATAGAACCAA 1495
Query 1372 CAAAAATTCGTTCTACTCTCAACGCAGAGTCTTCTTCTCATGCTGACACTGAGGCGGTAG 1431
||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1496 CAAAAGTTAGTTCTACGCTCAACGCAGAGTCTTCTTCTCATGCTGACACTGAGGAGGTAG 1555
Query 1432 ATGAAATCAAAGGAAGGTCTCAGTCTGAACAGAAAA---TGGATGAAACAAAAGATGAGT 1488
||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1556 ATGAAGTCAAAGGAGGGTCTCAGTCTGAACAGAAAACAATTGATGAAACAAAAGATGAGT 1615
Query 1489 CACAGTACGAACAAAAAACGATGACTGTGATGAGGGGTGGAGAAATGGTTCAGGTGAGTT 1548
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 CACAGTACGAACAGAAAACGATGACTGTGATGAGGGGTGGAGAAATGGTTCAGGTGAGTT 1675
Query 1549 ACAAGGTCTACATTCCTAAGAAGACCTCTTCTTTGGGTAGAAGAAAACTCAACAGGTGAA 1608
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1676 ACAAGGTCTACATTCCTAAGAAGGCCTCTTCTTTGGGTAGAAGAAAACTCAACAGGTGAA 1735
Query 1609 GCGGCGACATGAAGATAGT 1627
||| |||||||||||||||
Sbjct 1736 GCGACGACATGAAGATAGT 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5