BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950015

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32960.1 | Symbols:  | Domain of unknown function (DUF1985) ...   438    3e-122


> AT3G32960.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr3:13499677-13500415 FORWARD LENGTH=645
Length=645

 Score =  438 bits (237),  Expect = 3e-122
 Identities = 289/314 (92%), Gaps = 4/314 (1%)
 Strand=Plus/Plus

Query  159  AAGAACGTGGCATCATACATGATGAAGACAAAGTATGATATTCATGGATTTCCTCTAGCA  218
            ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  331  AAGAACGTGGCATCAAACATGATGAAGCCAAAGCATGATATTCATGGATTTCCTCTAGCA  390

Query  219  CTACACATTTGGATTCTTGAGTCTATTCCAATGCTACAAACAGCCTACAGCTGCATCAGT  278
            |||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct  391  CTACACATTTGGATTCTTGAGTCTATTCCAATGCTACAAACAACCTACAACCGAATCAGT  450

Query  279  TTAATAGAGAGGCCGACTGCATTCTTGTGTGAGAAATACACGAGCTTACCATCACCACAA  338
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  451  TTAATAGAGAGGCCTACTGCATTCTTGTGTGAGAAATACACGAGCCTACCATCACCACAA  510

Query  339  CTTTCTCAAATACAGAATATTGAAGCATC-TAATCATCTGAATGTATTTTGCATCTTACC  397
            ||||||||||||||||| ||||||||||| || ||||| ||| || |||| |||||||||
Sbjct  511  CTTTCTCAAATACAGAACATTGAAGCATCATA-TCATCCGAAGGTGTTTTTCATCTTACC  569

Query  398  TTCAATACCTAATGATCCTGAAGATACAGTCTCATTGGAAGACGAAGATGATCCAGAATT  457
             ||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct  570  GTCAATACCTGATGATCTTGAAGATAAAGTTTCATTGGAAGACGAAGATGATCCAGAATT  629

Query  458  A-AGTCTGCTGGTC  470
              | | ||||||||
Sbjct  630  GGA-TATGCTGGTC  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30894000405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5