BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950019

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch...   213    6e-55


> AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | 
chr3:19494377-19496095 REVERSE LENGTH=937
Length=937

 Score =  213 bits (115),  Expect = 6e-55
 Identities = 127/133 (95%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  23   GAATTTCCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATAGAACTGT  82
            |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  183  GAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGT  242

Query  83   GAGCTATGGAATGGATAATGGAGATGATATCTATATGCGTTCTTGGACTGGCACCACCAT  142
            |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct  243  GAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCAT  302

Query  143  TGGTCCTCACAAC  155
             ||||||||||||
Sbjct  303  CGGTCCTCACAAC  315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5