BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950020
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53970.1 | Symbols: | Tyrosine transaminase family protein ... 1989 0.0
> AT5G53970.1 | Symbols: | Tyrosine transaminase family protein
| chr5:21910533-21912777 FORWARD LENGTH=1571
Length=1571
Score = 1989 bits (1077), Expect = 0.0
Identities = 1220/1288 (95%), Gaps = 14/1288 (1%)
Strand=Plus/Plus
Query 1 GATCGAATTCAAGAAG-AGAGATGGAGAAT-G-G-AACAACGACGAGCACAATTACCATC 56
|||||||||||||||| ||||||||||||| | | ||| |||||||||||||||||||||
Sbjct 123 GATCGAATTCAAGAAGAAGAGATGGAGAATGGAGCAACGACGACGAGCACAATTACCATC 182
Query 57 AAAGGGATTCTGAGTTTGCTAATGGAAAGTAT--C-TCAGAGGAAGAAGAA--A-GAAAG 110
||||||||||||||||||||||||||||| || | |||||||||| ||| | |||||
Sbjct 183 AAAGGGATTCTGAGTTTGCTAATGGAAAGCATCACAACAGAGGAAGATGAAGGAGGAAAG 242
Query 111 AGAGTAATATCTCTGGGAATGGGAGACCCAACACTATACTCATGTTTTCGTACAACACAA 170
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 243 AGAGTAATATCTCTGGGAATGGGAGACCCAACACTCTACTCGTGTTTTCGTACAACACAA 302
Query 171 GTCTCTCTTCAAGCTGTTTCTGATTCTCTTCTCTCTAACAAGTTCCATGGTTATTCTCCT 230
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 303 GTCTCTCTTCAAGCTGTTTCTGATTCTCTTCTCTCCAACAAGTTCCATGGTTACTCTCCT 362
Query 231 ACCGTCGGTCTTCCCCAAGCTCGAAGGGCAATTGCAGAGTATCTATCGCGTGATCTTCCA 290
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 ACCGTCGGTCTTCCCCAAGCTCGAAGGGCAATAGCAGAGTATCTATCGCGTGATCTTCCA 422
Query 291 TACAAA-TTGTCACTGGATGATGTGTTTATCACATCAGGTTGTACGCAAGCAATCGATGT 349
|||||| || |||| ||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 423 TACAAACTT-TCACAGGATGATGTGTTTATCACATCGGGTTGCACGCAAGCGATCGATGT 481
Query 350 AGCATTGTCAATGTTGGCTCGTCCCAGGGCCAATATTCTGCTTCCAAGACCTGGTTTCCC 409
||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 482 AGCATTGTCGATGTTAGCTCGTCCCAGGGCTAATATACTTCTTCCAAGGCCTGGTTTCCC 541
Query 410 AATCTATGAACTCTGTGCTAAGTTTAGACACCTTGAGGTTCGTTACGTCGATCTTCTTCC 469
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 542 AATCTATGAACTCTGTGCTAAGTTTAGACACCTTGAAGTTCGCTACGTCGATCTTCTTCC 601
Query 470 AGAAAACGGATGGGAGATCGATCTTGATGCTGTCGAGTCTCTTGCAGACGAAAACACTGT 529
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 602 GGAAAATGGATGGGAGATCGATCTTGATGCTGTCGAGGCTCTTGCAGACGAAAACACGGT 661
Query 530 TGCTTTGGTTATTATAAACCCCGGTAATCCTTGTGGGAATGTCTATAGTTATCAGCATTT 589
|||||||||| |||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct 662 TGCTTTGGTTGTTATAAACCCTGGTAATCCTTGCGGGAATGTCTATAGCTACCAGCATTT 721
Query 590 GATGAAGATTGCGGAAAT-GGCGAAAAAATTAGGGTTTCTTGTGATTGCTGATGAAGTTT 648
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 722 GATGAAGATTGCGG-AATCGGCGAAAAAACTAGGGTTTCTTGTGATTGCTGATGAGGTTT 780
Query 649 ACGGTCATCTCGCTTTTGGTAGCAAACCGTTTGTGCCGATGGGTGTGTTTGGATCTATTG 708
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 ACGGTCATCTTGCTTTTGGTAGCAAACCGTTTGTGCCAATGGGTGTGTTTGGATCTATTG 840
Query 709 TTCCTGTGCTTACTCTTGGCTCTTTATCAAAGAGATGGATAGTTCCTGGTTGGCGGCTCG 768
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 841 TTCCTGTGCTTACTCTTGGCTCTTTATCAAAGAGATGGATAGTTCCAGGTTGGCGACTCG 900
Query 769 GGTGGTTTGTGACCACTGATCCTTCTGGTTCGTTTAAGGACCCTAAGATCATCGAGCGGT 828
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 901 GGTGGTTTGTCACCACTGATCCTTCTGGTTCCTTTAAGGACCCTAAGATCATTGAGAGGT 960
Query 829 TTAAGAAATACTTTGATATTCTTGGTGGACCAGCTACATTTATTCAGGCTGCAGTTCCCA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTAAGAAATACTTTGATATTCTTGGTGGACCAGCTACATTTATTCAGGCTGCAGTTCCCA 1020
Query 889 CTATTTTGGAACAGACGGATGAATCATTCTTCAAGAAAACATTGAACTCGTTGAAGAACT 948
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 1021 CTATTTTGGAACAGACGGATGAGTCTTTCTTCAAGAAAACCTTGAACTCGTTGAAGAACT 1080
Query 949 CTTCGGATATTTGTTGTGATTGGATCAAGGAGATTCCTTGCATTGATTCCTCGCATCGAC 1008
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTCGGATATTTGTTGTGACTGGATCAAGGAGATTCCTTGCATTGATTCCTCGCATCGAC 1140
Query 1009 CAGAAGGATCCATGGCAATGATGGTTAAGCTGAATCTCTCAATACTCGAAGATGTAAGCG 1068
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 1141 CAGAAGGATCCATGGCAATGATGGTTAAGCTGAATCTCTCATTACTTGAAGATGTAAGTG 1200
Query 1069 ACGATATCGACTTCTGTTTCAAGTTAGCTAGAGAAGAATCAGTCATCCTTCTTCCCGGGA 1128
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1201 ACGATATCGACTTCTGTTTCAAGTTAGCTAGGGAAGAATCAGTCATCCTTCTTCCTGGGA 1260
Query 1129 CCGCGGTGGGGCTGAAGAACTGGCTGAGGATAACGTTTGCGGCAGATGCACCTTCGATCG 1188
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 1261 CCGCGGTGGGGCTGAAGAACTGGCTGAGGATAACGTTTGCAGCAGATGCAACTTCGATTG 1320
Query 1189 AAGAAGCTTTTAAAAGGATCAAATGTTTCTATCTTAGACATGCCAAAACTCAATATCCAA 1248
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1321 AAGAAGCTTTTAAAAGGATCAAATGTTTCTATCTTAGACATGCCAAGACTCAATATCCAA 1380
Query 1249 CCTTATAGTTGATTTCTGATTTTGGTAT 1276
|| |||||||||||||||||||||||||
Sbjct 1381 CCATATAGTTGATTTCTGATTTTGGTAT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5