BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950025
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54030.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 126 9e-29
> AT5G54030.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr5:21925984-21927243 REVERSE LENGTH=1260
Length=1260
Score = 126 bits (68), Expect = 9e-29
Identities = 198/257 (77%), Gaps = 23/257 (9%)
Strand=Plus/Plus
Query 21 ATGTCTTCTAC---TGATTTCCAAGTAGCCACCATGCCT-AAACTCACGTTTCCGTTTCA 76
||||||||||| ||||||| |||| | ||||| || ||| ||| | ||||||||||
Sbjct 1 ATGTCTTCTACTGATGATTTCGAAGTGGAAACCATATCTGAAA-TCATGGTTCCGTTTCA 59
Query 77 TCATCATCCTTTATCAAGTTATACTTTTCAACTATGGCCTTCTTTTTGCTCTTTGTGCTC 136
|||||||||||||||||||||| ||| | || | | | |||||| ||||||||||| |
Sbjct 60 TCATCATCCTTTATCAAGTTATGCTTCTGAATTTTTGACTTCTT---GCTCTTTGTGC-C 115
Query 137 TTTTC-CTGACATCTCTAGTTTGCAAAGACATACAGTCACTCACAT-AGGCTATCACTGT 194
||||| || || | ||||| | | | | ||| ||||||| ||| || ||||| |||
Sbjct 116 TTTTCTCT-ACGTTTCTAG---G-AGA-A-ATA--GTCACTCGCATCAGA-TATCAGTGT 165
Query 195 ACGGATTGCGGCATGAAGTTGCACAAAGAATGCGTTGACCTTCTCTACCTCAACT-AGCC 253
| |||||||||| ||||||| ||| | |||||| | || || | ||||||| | ||
Sbjct 166 ATGGATTGCGGCTTGAAGTTACACGACGAATGCATCAACAGCCTTTCCCTCAACCGACCC 225
Query 254 ATTTCTGTGCAATCACA 270
||||||||||||||||
Sbjct 226 -TTTCTGTGCAATCACA 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12466401752
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5