BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950030
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54080.1 | Symbols: HGO | homogentisate 1,2-dioxygenase | ch... 2298 0.0
> AT5G54080.1 | Symbols: HGO | homogentisate 1,2-dioxygenase |
chr5:21945869-21948285 FORWARD LENGTH=1652
Length=1652
Score = 2298 bits (1244), Expect = 0.0
Identities = 1369/1430 (96%), Gaps = 5/1430 (0%)
Strand=Plus/Plus
Query 2 TCTCTGACGTGAAGAAGCCATGGAAGAGAAGAAGAAGAAACTTGAAGACTTAAACTATCA 61
||||||| ||||||||||||||||||||||||||||| | |||||||| || || |||||
Sbjct 33 TCTCTGATGTGAAGAAGCCATGGAAGAGAAGAAGAAGGAGCTTGAAGAGTTGAAGTATCA 92
Query 62 ATCAGGTTTTGGTAACCACTTCTCGTCGGAAGCAATCGCCGGAGCTTTGCCTTTAGATCA 121
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 93 ATCAGGTTTTGGTAACCACTTCTCATCGGAAGCAATCGCCGGAGCTTTACCGTTAGATCA 152
Query 122 GAACAGTCCTCTTCTTTGTCCTTATGGTCTCTACGCCGAGCAGATCTCTGGTACTTCTTT 181
|||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 153 GAACAGTCCTCTTCTTTGTCCTTACGGTCTTTACGCCGAACAGATCTCCGGTACTTCTTT 212
Query 182 CACTTCTCCTCGCAAGCTCAATCAAAGAAGTTGGTTGTACCGGATTAAACCATCGGTTAC 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 213 CACTTCTCCTCGCAAGCTCAATCAAAGAAGTTGGTTGTACCGGGTTAAACCATCGGTTAC 272
Query 242 ACATGAACCGTTCAAGCCTCGTGTACCAGCTCATAAGAAGCTTGTGAGTGAGTTTGATGC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACATGAACCGTTCAAGCCTCGTGTACCAGCTCATAAGAAGCTTGTGAGTGAGTTTGATGC 332
Query 302 ATCGAATAGTCGTACGAATCCGACTCAGCTTCGGTGGAGACCTGAGGATATTCCTGAATC 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 333 ATCAAATAGTCGTACGAATCCGACTCAGCTTCGGTGGAGACCTGAGGATATTCCTGATTC 392
Query 362 GGAGACTGATTTCGTTGATGGGTTATTTACCATTTGTGGAGCTGGAAGCTCGTTTCTTCG 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GGAGATTGATTTCGTTGATGGGTTATTTACCATTTGTGGAGCTGGAAGCTCGTTTCTTCG 452
Query 422 CCATGGATTCGCTATTCACATGTATGTGGCTAACAAAGGAATGAAAGACTCTGCATTTTG 481
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 453 CCATGGCTTCGCTATTCACATGTATGTGGCTAACACAGGAATGAAAGACTCCGCATTTTG 512
Query 482 CAACGCTGATGGTGACTTCTTGTTAGTTCCTCAAACAGGAAGGCTATGGATTGAAACTGA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CAACGCTGATGGTGACTTCTTGTTAGTTCCTCAAACAGGAAGGCTATGGATTGAAACTGA 572
Query 542 GTGTGGAAGGCTTTTGGTATCTCCTGGTGAGATTGCTGTTATACCGCAAGGATTTC-GTT 600
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||
Sbjct 573 GTGTGGAAGGCTTTTGGTAACTCCTGGTGAGATTGCTGTTATACCACAAGG-TTTCCGTT 631
Query 601 TCTCTGTAGATTTACCGGATGGGAAGTCGCGTGGTTATGTTGCTGAAATCTATGGGGCTC 660
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 632 TCTCCATAGATTTACCGGATGGGAAGTCTCGTGGTTATGTTGCTGAAATCTATGGGGCTC 691
Query 661 ATTTTCAGCTTCCTGATCTTGGACCAATAGGTGCCAATGGTCTTGCTGCACCAAGAGATT 720
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 692 ATTTTCAGCTTCCTGATCTTGGACCAATAGGTGCTAATGGTCTTGCTGCATCAAGAGATT 751
Query 721 TTCTTGCACCAACCGCGTGGTTTGAGGAAGGATTGCGGCCTGAATACACAATTGTTCAGA 780
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 752 TTCTTGCACCAACAGCATGGTTTGAGGATGGATTGCGGCCTGAATACACAATTGTTCAGA 811
Query 781 AGTTTGGCGGTGAACTTTTTACTGCTAAACAAGATTTCTCTCCATTCAATGTGGTTGCCT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AGTTTGGCGGTGAACTCTTTACTGCTAAACAAGATTTCTCTCCATTCAATGTGGTTGCCT 871
Query 841 GGCATGGCAATTACGTGCCTTATAAGTATGACCTGCAGAAGTTCTGTCCATACAACACTG 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 872 GGCATGGCAATTACGTGCCTTATAAGTATGACCTGAAGAAGTTCTGTCCATACAACACTG 931
Query 901 TCCTTTTAGATCATGGAGATCCATCTATAAATACAGTTCTTACAGCACCAACGGATAAAC 960
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 932 TGCTTTTAGATCATGGAGATCCATCTATAAATACAGTCCTTACAGCACCAACTGATAAAC 991
Query 961 CTGGTGTGGCCTTGCTTGATTTTGTCATATTCCCTCCTCGATGGTTGGTTGCTGAGCATA 1020
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 992 CTGGTGTGGCCTTGCTTGATTTTGTCATATTTCCTCCTCGATGGTTGGTTGCTGAGCATA 1051
Query 1021 CTTTTAGACCTCCTTACTACCATCGTAACTGCATGAGTGAATTTATGGGCTTAATCTACG 1080
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTTTTCGACCTCCTTACTATCATCGTAACTGCATGAGTGAATTTATGGGCTTAATCTACG 1111
Query 1081 GTGCATACGAGGCCAAAGCTGATGGATTTCTCCCTGGCGGTGCAAGTCTTCACAGTTGTA 1140
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1112 GTGCATACGAGGCGAAAGCTGATGGATTTCTCCCTGGCGGTGCAAGTCTTCATAGCTGTA 1171
Query 1141 TGACACCTCATGGTCCAGATACTACCACATACGAGGCGACAATAGCTCGAGTAAATGCAA 1200
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1172 TGACACCTCATGGTCCAGATACTACCACGTACGAGGCGACAATTGCTCGAGTAAATGCAA 1231
Query 1201 TGGCTCCTTCTAAACTCACAGGTACGATGGCTTTCATGTTTGAATCAGCCTTGATCCCTA 1260
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1232 TGGCTCCTTCTAAACTCACAGGTACGATGGCTTTCATGTTCGAATCAGCATTGATCCCTA 1291
Query 1261 GAGTCTGCCATTGGGCTCTGGAGTCTCCTTTCCTCGACCACGACTACTACCAATGTTGGA 1320
||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1292 GAGTCTGTCATTGGGCTCTGGAGTCTCCTTTCCTGGATCACGACTACTACCAGTGTTGGA 1351
Query 1321 TTGGCCTCAAGTCCCATTTCTCACGCATA-GACTTGAACAAGACAAATGTTGAACCAACA 1379
||||||||||||| |||||||| |||||| | |||| ||||||||||||||||| |||||
Sbjct 1352 TTGGCCTCAAGTCTCATTTCTCGCGCATAAG-CTTGGACAAGACAAATGTTGAATCAACA 1410
Query 1380 GAGAAAGAGCCAGGAGCTTCGGAGTAAAGAA-ACACAATTCACCTGGACC 1428
|||||||| |||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1411 GAGAAAGAACCAGGAGCTTCGGAGTAAAGAACACATAATTCACCTGCACC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5