BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950033
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1956 0.0
AT4G27585.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1027 0.0
> AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:21953787-21956564 REVERSE
LENGTH=1518
Length=1518
Score = 1956 bits (1059), Expect = 0.0
Identities = 1198/1263 (95%), Gaps = 18/1263 (1%)
Strand=Plus/Plus
Query 1 GTTAGTTACACAG-TTTCAACGATGAATCAACTCGCGCTTTCAAGATCCGGCGGTTACAC 59
||||||||||||| |||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 43 GTTAGTTACACAGCTTTCAACGATGAATCAGCTCGCGCTTTCAAGAT-C--CGGTTACAC 99
Query 60 GGCCGCCGTTAAGTTCCTCCC-ACTACTTTCCGCAGCTGTTCCGAAGATCATATCATCCC 118
|||||||| | ||| ||||| | | |||||||||||||||||||||||| ||||||| |
Sbjct 100 CGCCGCCGTGAGGTTTCTCCCTA-TGCTTTCCGCAGCTGTTCCGAAGATCTTATCATCTC 158
Query 119 TTGCCGCCGCATCCACCACCACCACCGTCCGTAACTTCAGCTCTACCGGAAGTCCTCTCA 178
| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 159 TCGCCGCCGCAT---------CCACCGTCCGCAACTTCAGCTCTACCGGAAGTCCTCTCA 209
Query 179 CCAGCTACCTAACCAAGAAGCCGTCGCCGGCAAAATCCTTCGCTTCCAGGCTTCTCCATC 238
||||||||| || ||| || || |||||| ||||||||||| |||||||||||||||| |
Sbjct 210 CCAGCTACCAAATCAATAAACCTTCGCCGTCAAAATCCTTCACTTCCAGGCTTCTCCACC 269
Query 239 AATCCT-CT--GCCGCTACTCCGCCGCAACAACTTTCCGGCGTCCGTAACTTCTCATCTC 295
|||||| || |||| |||||| ||||||||||||| ||||| ||||| |||||||||||
Sbjct 270 AATCCTCCTCCGCCGGTACTCCTCCGCAACAACTTTTCGGCGCCCGTAGCTTCTCATCTC 329
Query 296 CCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGGCTAACTGGGGAATCCGAATCG 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 330 CCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAATCG 389
Query 356 TGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCGG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCCGG 449
Query 416 CGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATTGCTTATGTTCATTCTCTAAAGG 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 CGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTTATGTTCATTCTCTAAAGG 509
Query 476 AAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCACA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCACA 569
Query 536 TCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTTGGCTTCTTATGGCGTTGAGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCGATGGTGTTCTCTACGTTAAGATTGTGGATCCTAAGTTGGCTTCTTATGGCGTTGAGA 629
Query 596 ATCCAATCTATGCTGTTATGCAGTTGGCTCAGACTACAATGCGTAGTGAGCTCGGGAAAA 655
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 630 ATCCGATCTATGCTGTTATGCAGTTGGCTCAGACTACAATGCGTAGTGAGCTCGGTAAAA 689
Query 656 TTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAATGAGAAGATTGTGGAAGCCA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TTACTCTTGACAAGACTTTTGAGGAACGGGACACTCTCAATGAGAAGATTGTGGAAGCCA 749
Query 716 TCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGTCTTCGTTATGAGATCAGGGATATCA 775
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 750 TCAATGTTGCTGCAAAAGATTGGGGTCTTCAGTGCCTTCGTTATGAGATCAGGGATATCA 809
Query 776 TGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGCTGAAGCTGAACGTAAAAAGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGCCTCCTAATGGAGTGAGAGTTGCTATGGAAATGCAAGCTGAAGCTGAACGTAAAAAGA 869
Query 836 GAGCCCAGATTCTTGAGTCTGAAGGAGAACGCCAAGCCCATATCAATAGAGCTGATGGTA 895
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 870 GAGCCCAGATTCTTGAGTCTGAAGGAGAACGTCAAGCCCATATCAATAGAGCTGATGGTA 929
Query 896 AGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAAAGATGGACCAAGTCAATCGTGCAC 955
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 930 AGAAAAGTTCTGTAATCTTGGAATCAGAAGCTGCAATGATGGACCAAGTCAATCGTGCAC 989
Query 956 AAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAACAGCCAAGGGACTGGCCATGG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AAGGTGAGGCTGAAGCAATATTAGCTAGAGCACAAGCAACAGCCAAGGGACTGGCCATGG 1049
Query 1016 TATCTCAATCCCTCAAGGAAGCTGGTGGAGCGGAGGCTGCAAGTTTGAGAGTTGCGGAGC 1075
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1050 TATCTCAATCCCTCAAGGAAGCTGGTGGAGAGGAGGCTGCGAGTTTGAGAGTTGCGGAGC 1109
Query 1076 AATACATTCAAGCTTTTGGCAAAATTGCTAAGGAGGGTACAACAATGCTGCTTCCAAGTT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1110 AATACATTCAAGCTTTTGGCAAAATTGCTAAGGAGGGTACAACAATGCTGCTTCCGAGTA 1169
Query 1136 CTGTTGACAATCCTGCTGGCATGATCGCTCAAGCTTTAACAATGTACAAAGGCTTGTCAA 1195
||| |||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 1170 ATGTCGACAATCCTGCTAGCATGATCGCTCAAGCTTTAGGAATGTACAAAGGGTTGTCAA 1229
Query 1196 CAAAGGTCCCAACAGTGCTTTCACAGAAACTTCAGGAGTAGAATCCTCTACCGACATGGT 1255
||||||||||||||||| ||||| |||||||| ||||||||||||||||| || ||||
Sbjct 1230 CAAAGGTCCCAACAGTGGTTTCAGGGAAACTTCTGGAGTAGAATCCTCTACTAACGTGGT 1289
Query 1256 TGT 1258
|||
Sbjct 1290 TGT 1292
> AT4G27585.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr4:13766763-13769961 REVERSE
LENGTH=1586
Length=1586
Score = 1027 bits (556), Expect = 0.0
Identities = 777/884 (88%), Gaps = 13/884 (1%)
Strand=Plus/Plus
Query 328 CCGCCGGCTAACTGGGGAATCCGAATCGTGCCGGAGAGGAAAGC-TTGTGTGATTGAGCG 386
|||||| | || ||||||||||| || || ||||||||||| || || ||||||||||||
Sbjct 298 CCGCCGACGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTT-TGTGATTGAGCG 356
Query 387 GTTTGGTAAATTCCAC-ACGACTTTGCCGGCGGGGATTCACTTCCTTGTTCCGTTTGTGG 445
|| |||||| | | | ||||| |||||| |||||||||| ||||| ||||||| ||||
Sbjct 357 ATTCGGTAAA-TACGCTACGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGTTCGTGG 415
Query 446 ATCGTATTGCTTATGTTCATTCTCTAAAGGAAGAAGCGATTCCTATT-GGTAATCAGACT 504
||||||||||||||||||||||||| ||||||||||| || || ||| | |||||||||
Sbjct 416 ATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCTATCCCGATTCCG-AATCAGACT 474
Query 505 GCGATTAC-AAAGGATAACGTTAGCATCCACATCGATGGTGTTCTCTACGTTAAGATTGT 563
|||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 GCGATTACTAAA-GACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGATTGT 533
Query 564 GGATCCTAAGTTGGCTTCTTATGGCGTTGAGAATCCAATCTATGCTGTTATGCAGTTGGC 623
|||||||||||| ||||||||||||||||||| ||| |||||||||||| | ||| ||||
Sbjct 534 GGATCCTAAGTTAGCTTCTTATGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGCTGGC 593
Query 624 TCAGACTACAATGCGTAGTGAGCTCGGGAAAATTACTCTTGACAAGACTTTTGAGGAACG 683
|||||| ||||||||||||||||| || || || |||||||| ||||| |||||||||||
Sbjct 594 TCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGGAACG 653
Query 684 GGACACTCTCAATGAGAAGATTGTGGAAGCCATCAATGTTGCTGCAAAAGATTGGGGTCT 743
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 654 AGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCT 713
Query 744 TCAGTGTCTTCGTTATGAGATCAGGGATATCATGCCTCCTAATGGAGTGAGAGTTGCTAT 803
|||||| |||||||||||||| |||||||| ||||| ||| |||||||| ||| ||||||
Sbjct 714 TCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGCGAGCTGCTAT 773
Query 804 GGAAATGCAAGCTGAAGCTGAACGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGA 863
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGA 833
Query 864 ACGCCAAGCCCATATCAATAGAGCTGATGGTAAGAAAAGTTCTGTAATCTTGGAATCAGA 923
| | ||| |||||||||| | ||||||||||||||||||||||||||||||| ||| ||
Sbjct 834 AAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCATCTGA 893
Query 924 AGCTGCAAAGATGGACCAAGTCAATCGTGCACAAGGTGAGGCTGAAGCAATATTAGCTAG 983
||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||
Sbjct 894 AGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAGCTAG 953
Query 984 AGCACAAGCAACAGCCAAGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGG 1043
|||||||||||| || || || |||| | || ||||||| |||||||||||| |||| ||
Sbjct 954 AGCACAAGCAACTGCGAAAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGG 1013
Query 1044 AGCGGAGGCTGCAAGTTTGAGAGTTGCGGAGCAATACATT-CAAGCTTTTGGCAAAATTG 1102
|| ||||| || |||||||||||||| |||||||||||| || || || || || ||||
Sbjct 1014 AGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACA-GCCTTCGGTAACATTG 1072
Query 1103 CTAAGGAGGGTACAACAATGCTGCTTCCAAGTTCTG-TTGACAATCCTGCTGGCATGATC 1161
| ||||||||||| | |||| ||||||||||| || || | ||||||||| |||||||
Sbjct 1073 CCAAGGAGGGTACGATAATGTTGCTTCCAAGTGGTGCTTCA-AATCCTGCTAGCATGATT 1131
Query 1162 GCTCAAGCTTTAACAATGTACAAAGGC-TTGTCAACAAAGGTCC 1204
|||||||||||||||||||||||| || |||||| ||| |||||
Sbjct 1132 GCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCC 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5