BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950041
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54160.1 | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | c... 1823 0.0
> AT5G54160.1 | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 |
chr5:21981996-21984363 FORWARD LENGTH=1367
Length=1367
Score = 1823 bits (987), Expect = 0.0
Identities = 1086/1133 (96%), Gaps = 9/1133 (1%)
Strand=Plus/Plus
Query 2 TCTCAAGAAACCTCACTAAAATGGGTTCAACGGCGGAGACACAATTAACTCCGGTGCAAG 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 TCTCAAGAAACCTCACTAAAATGGGTTCAACGGCAGAGACACAATTAACTCCGGTGCAAG 119
Query 62 TCACCGACGACGAAGCTGCCCTCTTCGCCATGCAACTAGCCAGTGCCTCCGTTCTTCCGA 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TCACCGACGACGAAGCTGCCCTCTTCGCCATGCAACTAGCCAGTGCTTCCGTTCTTCCGA 179
Query 122 TGGCTCTAAAATCTGCTTTAGAGCTCGACCTTCTTGAGATCATGGCCAAGAACGGTTCTC 181
||||| ||||||| || |||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 180 TGGCTTTAAAATCCGCCTTAGAGCTTGACCTTCTTGAGATTATGGCCAAGAATGGTTCTC 239
Query 182 CCATGTCTCCGACCGAGATCGCTTCTCATCTTCCGACCAAAAACCCTGAAGCTCCGGTCA 241
|||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 240 CCATGTCTCCTACCGAGATCGCTTCTAAACTTCCGACCAAAAATCCTGAAGCTCCGGTCA 299
Query 242 TGCTCGACCGTATCCTCCGTCTTCTTACGTCTCACTCCGTTC-TCACCTGCTCCAACCGT 300
|||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||
Sbjct 300 TGCTCGACCGTATCCTCCGTCTTCTTACGTCTTACTCCG-TCTTAACCTGCTCCAACCGT 358
Query 301 AAACTTTCCGGTGACGGCGTTGAACGGATATACGGGCTTGGTCCGGTTTGCAAGTATTTG 360
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 AAACTTTCCGGTGATGGCGTTGAACGGATTTACGGGCTTGGTCCGGTTTGCAAGTATTTG 418
Query 361 ACCAAGAACGAAGATGGTGTTTCCATTGCTGGTCTTTGTCTTACGAGCCAAGACAAGGTT 420
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 419 ACCAAGAACGAAGATGGTGTTTCCATTGCTGCTCTTTGTCTTATGAACCAAGACAAGGTT 478
Query 421 CTCATGGAAAGCTGGTACCATTTGAAGGATGCAATTCTTGATGGTGGGATTCCATTCAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCATGGAAAGCTGGTACCATTTGAAGGATGCAATTCTTGATGGTGGGATTCCATTCAAC 538
Query 481 AAGGCTTATGGAATGAGCGCGTTTGAGTACCACGGAACTGACCCTAGATTCAACAAGGTC 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 539 AAGGCTTATGGAATGAGCGCGTTCGAGTACCACGGGACTGACCCTAGATTCAACAAGGTC 598
Query 541 TTTAACAATGGAATGTCTAACCATTCCACAATCACCATGAAGAAGATTCTTGAGACCTAC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTAACAATGGAATGTCTAACCATTCCACAATCACCATGAAGAAGATTCTTGAGACCTAT 658
Query 601 AAGGGTTTCGAGGGCTTGACTTCTTTGGTTGATGTTGGTGGTGGCATTGGTGCTACTCTT 660
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 AAGGGTTTTGAAGGATTGACTTCTTTGGTTGATGTTGGTGGTGGCATTGGTGCTACACTC 718
Query 661 AAAATGATTGTCTCCAAGTACCCTAACCTTAAAGGCATCAATTTTGATCTCCCACATGTC 720
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 719 AAAATGATTGTCTCCAAGTACCCTAATCTTAAAGGCATCAACTTTGATCTCCCACATGTC 778
Query 721 ATCGAAGATGCTCCTTCTCATCCCGGTATTGAGCATGTTGGAGGAGATATGTTTGTAAGT 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCGAAGATGCTCCTTCTCATCCTGGTATTGAGCATGTTGGAGGAGATATGTTTGTAAGT 838
Query 781 GTCCCTAAAGGTGATGCCATATTCATGAAGTGGATATGTCATGACTGGAGCGACGAACAT 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 GTCCCTAAAGGTGATGCCATATTCATGAAGTGGATATGTCATGACTGGAGTGACGAACAT 898
Query 841 TGCGTGAAATTCTTGAAGAACTGCTACGAGGCGCTTTCAGAGGATGGAAAAGTGATATTA 900
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 899 TGCGTGAAATTCTTGAAGAACTGCTACGAGTCACTTCCAGAGGATGGAAAAGTGATATTA 958
Query 901 GCAGAGTGTATACTTCCAGAGACACCAGACTCAAGCCTCTCAACCAAACAAGTAGTCCAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCAGAGTGTATACTTCCAGAGACACCAGACTCAAGCCTCTCAACCAAACAAGTAGTCCAT 1018
Query 961 GTCGATTGCATTATGTTGGCTCATTAT---GGAGGCAAAGAACGAACCGAGAAAGAGTTT 1017
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1019 GTCGATTGCATTATGTTGGCTCACAATCCCGGAGGCAAAGAACGAACCGAGAAAGAGTTT 1078
Query 1018 GAGGCATTAGCCAAAGCATCAGGCTTCAAGGGCATCAAAGTTGTCTGCGACGCTTTTGGT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGGCATTAGCCAAAGCATCAGGCTTCAAGGGCATCAAAGTTGTCTGCGACGCTTTTGGT 1138
Query 1078 GTTAACCTTATTGAGTTGCTCAAGAAGCTCTAAAAGACCATAA-AATGTCCCT 1129
||||||||||||||||| ||||||||||||||||| || | || ||||| |||
Sbjct 1139 GTTAACCTTATTGAGTTACTCAAGAAGCTCTAAAA-AC-A-AACAATGTTCCT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5