BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950048

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   272    1e-72


> AT5G54165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21984569-21984964 
FORWARD LENGTH=396
Length=396

 Score =  272 bits (147),  Expect = 1e-72
 Identities = 240/281 (85%), Gaps = 21/281 (7%)
 Strand=Plus/Plus

Query  2    CAACAAATAGAATTCGAGGATGATGTCTATTTTTAGCCCCTTTGAAGCTCTTTACACTGA  61
            ||||||| ||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct  33   CAACAAAAAGAATTCGAGGATGATGTCTATTTTTAGCCCATTCGAAGCTCTTTACGCCGA  92

Query  62   ATCCAACGGCTTCAAGATGATATTCTCAGGCACCAAGAATCA--G-TC---T------C-  108
            ||||||||||||||||||||||||||||||||||||||| ||  | ||   |      | 
Sbjct  93   ATCCAACGGCTTCAAGATGATATTCTCAGGCACCAAGAAGCAAAGCTCCGGTGATAATCA  152

Query  109  --CG--G-CGACGGAGCAGCAAAAGAACGTTGGAAAAACTCCGGTTTCATCGGACGACGA  163
              ||  | |||| || ||||||||||||| ||||||||||||| |||| || ||||| ||
Sbjct  153  GTCGCCGGCGACAGATCAGCAAAAGAACGCTGGAAAAACTCCGATTTCGTCAGACGATGA  212

Query  164  AAAGAATAATAAGAAGAAGAAGATCCAACCGATGAGGATAGCTCCAGAGCTTGACGGTGT  223
            ||||| ||||||||||||||   ||||||| |||||||||||||||||||| || ||| |
Sbjct  213  AAAGAGTAATAAGAAGAAGA---TCCAACCTATGAGGATAGCTCCAGAGCTCGATGGTCT  269

Query  224  TCATTGTTTTGAAACTATTCTTCCATTTTGATGATCATGAT  264
            |||||||||||||||||||||||| |||| |||||||||||
Sbjct  270  TCATTGTTTTGAAACTATTCTTCCTTTTTAATGATCATGAT  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12566937250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5