BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950049
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54170.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 2161 0.0
> AT5G54170.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:21984878-21987208 REVERSE
LENGTH=1697
Length=1697
Score = 2161 bits (1170), Expect = 0.0
Identities = 1327/1400 (95%), Gaps = 21/1400 (2%)
Strand=Plus/Plus
Query 1 TACTTATCCTCTGCAAAGTTATGGCTTTGCTTGAGAGTATAATCTTAGGGCTAATCACAG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 150 TACTTATCCTCTGCAAAGTTATGGCTTTGCTTGAGAGTATAATATTAGGGCTAATCACAG 209
Query 61 GATGGTTAGCTTTTGTTGTTGGATTGATTATTGGATGGACTTGGAAACCAAGATGGGTTT 120
||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||||||
Sbjct 210 GATGGTTAGCTTTTGTTATTGGGTTGGTTATTGGATGGGCATGGAAACCAAGATGGG--- 266
Query 121 CTTCTTCTTCATCTTCTAATAATCGACAAGTTAAATTACAATGTTCTGCTCCAAGATCTT 180
| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 267 --T-TTC-T--TCTTCTAATAATCGACAAGTCAAATTACAATGTTCTGCTCCAAGATCTT 320
Query 181 TTGATTTGTCTTTACCATCTTCTTCTCCAAGTTCTGTTGTTACTTCTCCTTTAAAGGGTT 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 321 TTGATTTGTCTTTACCATCTTCTTCTCCTAGTTCTGTTGTTACTTCTCCTTTGAAGGGTT 380
Query 241 TTGGATCAGCTCCTTGCTTAAAGGCTCTTGTTTGTGATACATGGACTATGGCTTTAAGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTGGATCAGCTCCTTGCTTAAAGGCTCTTGTTTGTGATACATGGACTATGGCTTTAAGAC 440
Query 301 AACAGAG---AACAGTTTCTCCTGATTCTTCTTCGTCATCATCTGATTCTTCTGAACAAC 357
||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 441 AACAGAGACAAACAGTTTCTCCTGATTCTTCTTCTTCTTCATATGATTCTTCTGAACAAC 500
Query 358 ATGTGGGTTTACTTTCAAGAGTGAAGAAAACAGAGGAGAGATTGCCTAATACTGTTACTG 417
|| ||| ||| |||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 501 ATTTGGATTTGGTTTCAAGAGTGAAGAAAACAAAGGAGAGATTGCCTAATACTGTAACAG 560
Query 418 AGTTAGATTTGAGACATCTTGTGCAATTGGTTGAGAGGAAAGATGGTGGTCAAGCTTGGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGTTAGATTTGAGACATCTTGTGCAATTGGTTGAGAGGAAAGATGGTGGTCAAGCTTGGA 620
Query 478 TTCAGATGATGGATCGTTTTACTCCTGGTATGAGATATCAAGCTTGGTTGAGAGAACCTA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 621 TTCAGATGATGGATCGTTTTACTCCTGGTATGAGATACCAAGCTTGGTTGAGAGAACCTA 680
Query 538 AGAATGGTCCTACTGAGTACAGAAGCAAAACTGTGTTTGAAGATGCAACTCCTGAGATTT 597
||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||| |
Sbjct 681 AGAATGGTCCTACTGAGTATAGAAGTAGAACTGTGTTTGAAGATGCAACTCCTGTGATGT 740
Query 598 TAAGAGACTTTTTCTGGGATGATGAGTTTAGACCAACTTGGGATACAATGCTTTCTAATT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAAGAGACTTTTTCTGGGATGATGAGTTTAGACCAACTTGGGATACAATGCTTTCTAATT 800
Query 658 CCACAACTGTTGAAGAGTGTCCAAGTACTGGAACCATGATTGTTAGATGGATACGCAAGT 717
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 801 CCACTACTGTTGAAGAGTGTCCCAGTACTGGAACCATGATTGTTAGATGGATACGCAAGT 860
Query 718 TCCCGTTCTTCTGCAGTGATAGAGAGTATGTGATCGGTCGCAGGATATGGAATTGTGGAA 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 861 TCCCGTTCTTCTGCAGTGATAGAGAGTATGTAATCGGTCGCAGGATATGGAATTGTGGAA 920
Query 778 ACTCTTATTATTGTGTTACAAAGGGAGTATCGGTTCCTTCTATACCGCCTAACAACAAAC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ACTCTTATTACTGTGTTACAAAGGGAGTATCGGTTCCTTCTATACCGCCTAACAACAAAC 980
Query 838 AAAAACGCGTGGATTTGTTCTACTCGAGCTGGTGCATTCGACCAGTTGAATCAAGAAGAG 897
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 981 AAAAACGCGTGGATTTGTTCTACTCAAGCTGGTGCATTCGACCAGTGGAATCAAGAAGAG 1040
Query 898 ACGATGGAGTAACAAGTGCCTGCGAAGTACTTCTATTCCACCACGAAGACATGGGGATAC 957
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1041 ACGATGGGGTAACAAGTGCCTGCGAAGTACTTCTATTCCACCACGAAGACATGGGAATAC 1100
Query 958 CGAGAGAAATCGCAAAGCTTGGAGTGAAACGAGGAATGTGGGGAGCAGTGAAGAAGATGG 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 CTAGAGAAATCGCAAAGCTTGGAGTGAAACGAGGAATGTGGGGAGCAGTGAAGAAGATGG 1160
Query 1018 AACCCGGTTTACGTGCTTACCAAACGCAAAGACTCTCAG--G-AGGAACCAAGCTTTCTC 1074
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1161 AACCCGGTTTACGTGCTTACCAAACGCATAGACTCTCAGATGGAGGAACCAAGCTTTCTC 1220
Query 1075 GGTCTGCTTTCATGGCCCAAATCAACACCAAGATCACACAAGACCATCTCATTTCGCTAA 1134
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 1221 GGTCTGCTTTCATGGCTCAAATCAACACCAAGATCACACAAGACCATCTCATCTCCCTCA 1280
Query 1135 GCAACGGCGCATCGCCTGTCACTGAAACTCCCGTTACATTGAATCAAGGAAACCGAGCTG 1194
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1281 GCAACGGTGCATCGCCTGTCACTGAAACTCCCGTTACATTAAACCAAGGAAACCGAGCTG 1340
Query 1195 CAAATCTGAAGAAACTGTTGATTATCGGTGGAGCTGTAGCGGTTGTTTGCAGTTTGAGCG 1254
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1341 CGAATCTGAAGAAACTGTTGATTATCGGTGGAGCTGTTGCGGTTGTCTGCAGTTTAAGCG 1400
Query 1255 GAGGGGCTTTTGTTCCTCCTGCGTTTCTTTTAGGGTTTGGGAAGAGGTTTGTTAATGGTG 1314
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1401 GAGGTGCTTTTGTTCCTCCTGCGTTTCTTTTAGGTTTTGGGAAAAGGTTTGTTAATGGTG 1460
Query 1315 GAAGAAAACGTCAGCTCGAAGGAACAACAAG---TCAGAGTCAGACTACTTCTCCATAGA 1371
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1461 GAAGAAAACGTCAGCTCGAAGGAACAACAAGAAGTGAGAGTCAGACTACTTCTTCATAGA 1520
Query 1372 AGAATCTTGAAACCAAGAAT 1391
| |||||| |||||||||
Sbjct 1521 A---TCTTGAGACCAAGAAT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5