BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950051
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-219457... 274 4e-73
AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599 RE... 267 6e-71
AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-218886... 265 2e-70
AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 243 1e-63
AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 156 1e-37
AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 145 3e-34
AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcripti... 93.5 1e-18
> AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-21945709
REVERSE LENGTH=361
Length=361
Score = 274 bits (148), Expect = 4e-73
Identities = 161/167 (96%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 163 GAACCTGTCAGACCGCCGTGCAACCACCCCGGCAAGGTAGAACCGAGCCGAGTAACGATC 222
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 GAACCTGTCAGACCGCCGTGCGACCACCCCGGCAAGGTAGAACCGAGCCGAGTAACGATC 262
Query 223 CTCTACAGCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCT-GATAGCA 281
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 261 CTCTACAGCACCGGATGCGTCCGAGGACGATCGTAGCCGTCAATCACGCTCTAGCC-GCA 203
Query 282 CGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 156
> AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599
REVERSE LENGTH=622
Length=622
Score = 267 bits (144), Expect = 6e-71
Identities = 157/163 (96%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 167 CTGTCAGACCGCCGTGCAACCACCCCGGCAAGGTAGAACCGAGCCGAGTAACGATCCTCT 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTGTCAGACCGCCGTGCAACCACCCCGGCAAGGTAGAACCGAGCCGAGTAACGATCCTCT 139
Query 227 ACAGCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCTGATAGCACGGTC 286
|||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 138 ACAGCACCAGATGCGTCCTAAGACGATCGTAGCCGTCAATCACGCTCTGATCGCACGGCC 79
Query 287 ATGGTTCATCAACCAGGGTTAAGGGCCTGTCTC-TTGAGAAAT 328
||||||||||||||||||||||||||||||||| || ||||||
Sbjct 78 ATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCCTT-AGAAAT 37
> AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-21888667
FORWARD LENGTH=702
Length=702
Score = 265 bits (143), Expect = 2e-70
Identities = 159/166 (96%), Gaps = 3/166 (2%)
Strand=Plus/Minus
Query 165 ACCTGTCAGACCGCCGTGCAACCACCCCGGCAAGGTAG-AACCGAGCCGAGTAACGATCC 223
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 544 ACCTGTCAGACCGCCGTGCGACCACCCCGGCAAGGTAGAAACCGAGCCGAGTAACGATCC 485
Query 224 TCTACAGCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCTGA-TAGCAC 282
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 484 TCTACAGCACCGGATGCGTCCGAGGACGATCGTAGCCGTCAATCACGCTCT-AGCCGCAC 426
Query 283 GGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 380
> AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to
24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:3469636-3471488 FORWARD LENGTH=980
Length=980
Score = 243 bits (131), Expect = 1e-63
Identities = 153/163 (94%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 167 CTGTCAGACCGCCGTGCAACCACCCCGGCAAGGTAGAACCGAGCCGAGTAACGATCCTCT 226
||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||
Sbjct 202 CTGTCAGACCGCCGTGCGACCACCCCGGCAAGGAAG-ACCAAGCCGAGTAACGATCCTCT 144
Query 227 ACAGCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCTGATAGCACGGTC 286
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 143 ACAGCACCGGATGCGTCCGAAGACGATCGTAGCCATCAATCACGCTCTGACCGCACGGTC 84
Query 287 ATGGTTCATCAACCAGGGTTAAGGGCCTGTCTC-TTGAGAAAT 328
|||||||||||||||||||| |||||||||||| || ||||||
Sbjct 83 ATGGTTCATCAACCAGGGTTTAGGGCCTGTCTCCTT-AGAAAT 42
> AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G54062.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:21888148-21889254
REVERSE LENGTH=507
Length=507
Score = 156 bits (84), Expect = 1e-37
Identities = 95/100 (95%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 230 GCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCTGA-TAGCACGGTCAT 288
||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 307 GCACCGGATGCGTCCGAGGACGATCGTAGCCGTCAATCACGCTCT-AGCCGCACGGTCAT 365
Query 289 GGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 405
> AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G53905.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828
Length=828
Score = 145 bits (78), Expect = 3e-34
Identities = 93/100 (93%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 230 GCACCGGATGCGTCCGAAGACGATCGTAGCCGTCAATCACGCTCTGA-TAGCACGGTCAT 288
||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||
Sbjct 31 GCACCGGATGCGTCCGAGGACAATCGTAGCCGTCAATCACGCTCT-AGCCGCACGGTCAT 89
Query 289 GGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
|||||||||||||||||| |||||||||||||||||||||
Sbjct 90 GGTTCATCAACCAGGGTTTAGGGCCTGTCTCTTGAGAAAT 129
> AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcription
factor A9 | chr5:21943983-21945651 FORWARD LENGTH=1512
Length=1512
Score = 93.5 bits (50), Expect = 1e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 279 GCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 328
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCACGGTCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCTTGAGAAAT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5