BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950054
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54210.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1284 0.0
AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 453 1e-126
AT3G15330.1 | Symbols: | pseudogene of the NLI interacting fac... 150 2e-35
> AT5G54210.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:22008612-22009532 FORWARD
LENGTH=921
Length=921
Score = 1284 bits (695), Expect = 0.0
Identities = 844/916 (92%), Gaps = 10/916 (1%)
Strand=Plus/Plus
Query 24 ATGTCTGTAATGCAACAAAATCTTTCACTAGAACCAAAATCTAAAAGACGAAAGATTGAT 83
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct 1 ATGTCTGTAATGCAACAAAATCTTTCAGTTGAACCAAAATCTAAAAAACGAAAGATCGAT 60
Query 84 TCAGAGATTAAttcttcatcttcttcttcttctAATAACTGTGGTCACTTCTTCGTTCGT 143
|||||||||||| |||| ||||||||| | ||| |||| |||||| |||||||||
Sbjct 61 TCAGAGATTAATAATTCA---TCTTCTTCTACGAAT---TGTGATCACTTTTTCGTTCGT 114
Query 144 TACGGAATCTGTTGTCACTGTAGATCGAACGTAGAGAGACATGGAGGACGAGCATTCGAT 203
||||||||||||||| | |||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 115 TACGGAATCTGTTGTAATTGTAGATCAAACGTAGAGAGACATAGAGGACGATCATTCGAT 174
Query 204 TATCTAGTTGATGGATTAGAGTTAAGCGACGTAGCAGTGAAGGTTACTAAGCGAGTTACT 263
|| ||||||||||||||| ||||||||||| ||||||| | |||||| |||||||| ||
Sbjct 175 TACCTAGTTGATGGATTACAGTTAAGCGACATAGCAGTCACGGTTACAAAGCGAGTCACA 234
Query 264 ACACAAATCACTTGCTTCAACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACG 323
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 235 ACACAAATCACTTGCTTTAACGACAAGAAGCTTCACTTGGTACTTGACTTGGACCACACG 294
Query 324 CTTCTCCACACCGTTATGGTTTCGAATCTTTCTAAAGAAGAAACGTATCTAATTGGAGAA 383
||||| |||||||||||| ||||||||||| |||||||||| ||||||||||| | ||||
Sbjct 295 CTTCTTCACACCGTTATGATTTCGAATCTTACTAAAGAAGAGACGTATCTAATCGAAGAA 354
Query 384 GCAGATTCAAGGGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATA 443
| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 355 GAAGATTCAAGGGAAGATCTACGGAGGTTAAACGGAGGATACTCAAGCGAGTTCTTGATA 414
Query 444 AAGCTTAGACCTTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTTCCATGTAT 503
||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 415 AAGCTTAGACCTTTTGTTCACGAGTTTCTTAAAGAAGCTAACAAGATGTTTTCCATGTAT 474
Query 504 GTTTACACGATGGGAGATCGTGATTACGCAAAT-AACGTGTTGAAGCTAATTGATCCGGA 562
||||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||
Sbjct 475 GTTTACACGATGGGAGATCGTGATTACGC-AATGAATGTGTTGAACCTGATTGATCCGGA 533
Query 563 GAAAA-TATACTTTGGACATCGAGTGATAACCAGAAACGAGAGTCCTTATATAAAGACAC 621
|||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 534 -AAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTTATATTAAGACGC 592
Query 622 TTGATCTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAAGTTT 681
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 593 TTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATACTCCTCATGTTT 652
Query 682 GGCCTGATGACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 741
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGA 712
Query 742 CAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAGACGAGGGTCGAA 801
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 713 CAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAGACGAGAGTCGAA 772
Query 802 ACGATGGATCGTTGGCGAATGTTTTGAAAGTTATCAAGGAAATTTATGAAGGATTCTTTA 861
|||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 773 ACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATGAAGGATTCTTCA 832
Query 862 GCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATA 921
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCTTCATG 892
Query 922 ATGCACGTAGACCAAA 937
||||||||||||||||
Sbjct 893 ATGCACGTAGACCAAA 908
> AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7033657-7034874 REVERSE LENGTH=1218
Length=1218
Score = 453 bits (245), Expect = 1e-126
Identities = 638/818 (78%), Gaps = 66/818 (8%)
Strand=Plus/Plus
Query 119 TAA-CTGTGGTCACTTCTTCGTTCGTTACGGAATCTGTTGTCACTGTAGATCGAAC-GTA 176
||| ||| |||||||||||||| |||||||||||||| ||| |||| |||||| || |||
Sbjct 53 TAATCTGCGGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCG-ACGGTA 111
Query 177 G--AGAGACATGGA-GGACGAGCATTCGATTATCTAGTTGATGGATTAGAGTTAAGCGAC 233
| |||||| | | || ||||||||||||||||| || |||| ||| | |||||| |
Sbjct 112 GACAGAGAC-T--ACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCAT 168
Query 234 GTAGCAG-TGAAGGTTACTAAGCGAGTTACTACACAAATCACTTG-CTTCAACGACAAG- 290
||| | || |||||| ||| | ||||||||||| || |||| ||| ||||| ||
Sbjct 169 AAAGCCGTTG-CGGTTACAAAGAGCCTTACTACACAACTCGCTTGCCTT-AACGA-GAGA 225
Query 291 AAGCTTCACT-TGGTACTTGACTTGGATCACACGCTTCTCCACACCGTTATGGTTTCGA- 348
|||||||| | | || ||||||||||| |||||||||||||| | ||||| |||| |
Sbjct 226 AAGCTTCA-TCTAGTCCTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTC-AC 283
Query 349 ATCTTTCTAAAGAAGA-AACGTATCTAATT-GGAGAAG-CAGATTCAAGGGAAGATCTAT 405
||||| ||| ||| || |||||| ||| |||| || |||||| ||||||||||| |
Sbjct 284 GGCTTTCCGAAGGAGAGAA-GTATCT-ATTGGGAG-AGTCAGATTTTAGGGAAGATCTTT 340
Query 406 GGA-AGTTTAACGGAGGATACTCAAGCGAGTTCTTGATAAAGCTTAGACCTTATGTTCAC 464
||| | || || | | || || | | ||||||| ||| |||||| |||||||
Sbjct 341 GGACA-CTTGAC--A-G-------AGAGA-TGC-TGATAAAACTTCGACCTTTTGTTCAC 387
Query 465 GAGTTTCTTAAAGAAGCCAACGAGATGTTT-TCCATGTATGTTTACACGAT-GGGAGATC 522
|||||||| ||||||||||||||||| ||| ||||||||||| |||||||| |||| |||
Sbjct 388 GAGTTTCTGAAAGAAGCCAACGAGAT-TTTCTCCATGTATGTCTACACGATGGGGA-ATC 445
Query 523 GTGATTACGCAAATAAC-GTGTTGAAGCT-AATTGATCCGGAGAAAATATACTTTGGACA 580
|||| ||||| | | ||| |||| | ||||||||| ||||| |||||||||| |
Sbjct 446 GTGACTACGCTCA-GGCTGTGCTGAA-ATGGATTGATCCGAAGAAAGTATACTTTGGGGA 503
Query 581 TCGAGTGATAACCAGAAACGAGAGTCCTTATAT-AAAGACACTTGATCTTGTTTTGGCTG 639
| |||| || |||||| |||||||| || | | ||||| ||||||||||| |||||||
Sbjct 504 TAGAGTCATTACCAGAGACGAGAGTGGTT-TTTCGAAGACGCTTGATCTTGTGTTGGCTG 562
Query 640 ATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAAGTTTGGCCTGATGACAAGAGGA 699
|||||||||||||||||||||||||||| |||| ||| |||||||||||| | ||||||
Sbjct 563 ATGAGTGTGGAGTTGTGATTGTGGATGACACTCGTCATGTTTGGCCTGATCATGAGAGGA 622
Query 700 ACCTGCTAGAGATCACCAAATACAATTATTTTAGTGACAAGACAAGACGCGATGTGAAGT 759
| |||||| |||| ||||| |||| ||| || || || | | | | ||| |||
Sbjct 623 ATCTGCTACAGATTACCAAGTACAGTTACTTCAGAGATTATA---GTCATGAT---AAGG 676
Query 760 ACTCGAAATCTTATGCAGAGGAGAAGAGAGACGAGGGTCGAAACGATGGATCGTTGGCGA 819
| || |||||||| ||||||||||||||||||||| || | ||| | ||||| |||||||
Sbjct 677 AGTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAACCAGGGATCATTGGCGA 736
Query 820 ATGTTTTGAAAGTTATCAAGGAAATTTATGAAGGATTCTTT-AGCGGCGGAGTTGAGAAA 878
|||||||||||||| ||||||| || | ||| ||| ||| || |||||| ||||| ||
Sbjct 737 ATGTTTTGAAAGTTCTCAAGGATGTTCACCAAGAATT-TTTCAGAGGCGGAATTGAGGAA 795
Query 879 GAGTTAGATATTGATTCAAAGGATGTGAGGTTGTTGCT 916
|||||| | ||||||| |||||| |||||||
Sbjct 796 ---TTAGAT-T-----CAAAGGACGTGAGGCTGTTGCT 824
> AT3G15330.1 | Symbols: | pseudogene of the NLI interacting factor
(NIF) protein family | chr3:5158749-5159597 FORWARD LENGTH=849
Length=849
Score = 150 bits (81), Expect = 2e-35
Identities = 458/631 (73%), Gaps = 62/631 (10%)
Strand=Plus/Plus
Query 283 ACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACGCTTCTCCACACCGTTATGG 342
||| |||||||||||||||||||||||||||||| |||||||| ||||| || | | |
Sbjct 228 ACG-CAAGAAGCTTCACTTGGTACTTGACTTGGACCACACGCTAATCCACTCCATGAAGA 286
Query 343 TTTCGAATCTTTCTAAAG-A-AGAAACGTATCTAATT---G--GAGAAG-CAGATTCAAG 394
||| |||||||| |||| | ||||| |||||||| | ||||| ||| ||||||
Sbjct 287 CTTCAAATCTTTCCAAAGCAGAGAAA--TATCTAATCAAAGAAGAGAAATCAGGTTCAAG 344
Query 395 GGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATAAAGCTTAGACC 454
| ||||||| | || | |||| | ||| | | || | ||| | || ||||
Sbjct 345 GAAAGATCTGCGTAAATATAAC--A--ATA-----G--A-TTAGT--TAA-GTTTCGACC 389
Query 455 TTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTT-CCATGTA-TGTTTACACG 512
|| |||| | ||||| ||||||||||||||| || | ||| ||||| | || ||||||
Sbjct 390 TTTTGTTGAAGAGTTCCTTAAAGAAGCCAACAAGCT-TTTCACCATG-ACTGCTTACACA 447
Query 513 ATGGGAGAT-CGTGATTACGCAAATAACGTGTTGA-AGC-TAATTGATCCGGAGAAAATA 569
| || | | | ||||| | | | ||||| || | |||||||| | |||||
Sbjct 448 AAAGGCGGTTCCAC-TTACGGTCA-AGC-TGTTGTGAGGATGATTGATCCAAACAAAATC 504
Query 570 TACTTT-GGACATCGAGTGATAACCAGAAACGAGAGTCCTTA-TAT-AAAGACACTTGAT 626
|| ||| || ||||| | ||||| ||||| ||||||||| | | | ||| |||||||||
Sbjct 505 TA-TTTCGGGGATCGAATAATAACTAGAAAAGAGAGTCCTGACT-TGAAA-ACACTTGAT 561
Query 627 CTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAA-GTTTGGCC 685
||||| || ||||||||| ||||| | |||||||||||| |||| || || ||||||||
Sbjct 562 CTTGTCTTAGCTGATGAGCGTGGAATCGTGATTGTGGATAATACGCCA-AATGTTTGGCC 620
Query 686 TGATGACAAGAGGAACCTGCTAGAGATCACCAAA-TACAATTATTTTAGTGACAA-GACA 743
| || | ||||| ||| || | |||||||| || ||| |||||| | || | | ||
Sbjct 621 TCATCATAAGAGAAACTTGTTGGAGATCAC-AAGCTACTTTTATTTCAAAAACGATGGCA 679
Query 744 AGACGCGATG-TGAAGTACTCGAA-ATCTTATGCAGAGGAG-AAGAGAGACGAGGGTC-G 799
| | | ||| ||| || | || ||| || || ||| || ||||| || ||| | | |
Sbjct 680 AAAA-C-ATGATGAGGT-CAAGATTATCCTACGCCGAG-AGGAAGAGTGATGAGAG-CAG 734
Query 800 AAACGATGGATCGTTGGCGAATGTTTTGAAAGTTA-TCAAGGAAATTTATGAA-GGATTC 857
|| | | || | |||| |||| || ||||| || |||| ||| || || || ||||||
Sbjct 735 AACCAAAAGAGCATTGGTGAATCTTCTGAAA-TTCCTCAAAGAAGTTCAT-AACGGATTC 792
Query 858 TTTAGCGGCGGAGTTGA-GAAAGAGTTAGAT 887
|||| | | ||| |||| ||| |||||||||
Sbjct 793 TTTACCTGTGGACTTGAAGAA-GAGTTAGAT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5