BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950055
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhib... 416 1e-115
> AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhibiting
protein 2 | chr5:2133918-2135166 FORWARD LENGTH=1166
Length=1166
Score = 416 bits (225), Expect = 1e-115
Identities = 243/252 (96%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 371 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACCGT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 167 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACTGT 226
Query 431 CAACCACCGCGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGTTCAGATCCCAGC 490
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 227 CAACCACCGTGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGGTCAGATCCCCCC 286
Query 491 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 346
Query 551 TGGTCAGATCCAACCCACTATTGCCAAGCTCAAGAATCTCACTTTTCTCAGACTAAGCTG 610
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 347 TGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGACTAAGCTG 406
Query 611 GACGAATCTCAC 622
||| ||||||||
Sbjct 407 GACCAATCTCAC 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5