BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950057
Length=331
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54220.1 | Symbols: | Cysteine-rich protein | chr5:22011349... 484 2e-136
> AT5G54220.1 | Symbols: | Cysteine-rich protein | chr5:22011349-22011796
FORWARD LENGTH=332
Length=332
Score = 484 bits (262), Expect = 2e-136
Identities = 283/293 (97%), Gaps = 2/293 (1%)
Strand=Plus/Plus
Query 21 ATGGGTTCTTTTAAATTGTTGGTTGCATTCACTCTCGTTGTTATGATGACCATTTCCTAT 80
|||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1 ATGGGTTCTTCTAAATTGTTGGTTGCATTCACTCTCATCGTCATGATGACCATTTCCTAT 60
Query 81 GACCTCTTCTCTGGAATAGGAATAAG-TGCGAGAACTGTGCCTCCAACATGCTATGAAAG 139
||||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 61 GACCTCTTCACCGGAATAGGAAT-AGATGCGAGAACTGTGCCTCCGACATGCTATGAAAG 119
Query 140 TTGTAACGCGACATTTCAAAATCCAGAATGTAACAAAATGTGTGTAGGATTGGCTTATAA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTGTAACGCGACATTTCAAAATCCAGAATGTAACAAAATGTGTGTAGGATTGGCTTATAA 179
Query 200 AGATGGTAGCTGCATTTATCCTCCTCCTGAGGTTGATGGTCTTCCTCCTAAACGACCTTA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATGGTAGCTGCATTTATCCTCCTCCTGAGGTTGATGGTCTTCCTCCTAAACGACCTTA 239
Query 260 CTTTCCTCGTTGTTGTTGTAATCCTATAATTCTTTCTCCTCCTTCTCCTTGAT 312
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CTTTCCTCGTTGTTGTTGTAATCCTATAATTCTTTCACCTCCTTCTCCTTGAT 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15432198943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5