BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950058
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54210.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 688 0.0
AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 285 3e-76
> AT5G54210.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:22008612-22009532 FORWARD
LENGTH=921
Length=921
Score = 688 bits (372), Expect = 0.0
Identities = 424/450 (94%), Gaps = 0/450 (0%)
Strand=Plus/Plus
Query 1 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAAAGAACGTGTTGAAGC 60
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 461 TGTTTTCCATGTATGTTTACACGATGGGAGATCGTGATTACGCAATGAATGTGTTGAACC 520
Query 61 TGATTGATCCGGAGAAAGTATACTTTGGGGATCGAGTGATAACCAGAAACGAGAGTCCTT 120
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 521 TGATTGATCCGGAAAAAGTATACTTTGGAGATCGAGTGATAACTAGAAACGAGAGTCCTT 580
Query 121 ATATAAAGACACTTGATCTTGTTTTGGCAGATGAGTGTGGAGTTGTGATTGTGGATGATA 180
|||| ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 581 ATATTAAGACGCTTGATCTTGTTTTAGCTGATGAGTGTGGTGTTGTGATTGTGGATGATA 640
Query 181 CTGCTCAAGTTTGGCCTGATCACAAGAGGAACCTGCTAGAGATCACCAAATACAATTATT 240
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 641 CTCCTCATGTTTGGCCTGATCACAAGAGGAATTTGCTAGAGATCACCAAATACAATTATT 700
Query 241 TTAGTGACAAGACAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAGAGAG 300
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 701 TTAGTGACAAGACAAGACACGATGTGAAGTACACGAAATCTTATGCAGAGGAGAAGAGAG 760
Query 301 ACGAGGGTCGAAACGATGGATCGTTGGGGAATGTTTTGAAAGTTATCAAGGAAGTTTATG 360
||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 761 ACGAGAGTCGAAACGATGGATCTTTGGCGAATGTTTTGAAAGTTATCAAGCAAGTTTATG 820
Query 361 AACGATTCTTTAGCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATGTGAGGT 420
|| ||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 821 AAGGATTCTTCAGTGGAGGAGTTGAGAAAGACTTAGATATTGATTCAAAGGATGTGAGGT 880
Query 421 TGTTGCTTCATGATGCACGTAGACCAAAGT 450
||||||||||||||||||||||||||||||
Sbjct 881 TGTTGCTTCATGATGCACGTAGACCAAAGT 910
> AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7033657-7034874 REVERSE LENGTH=1218
Length=1218
Score = 285 bits (154), Expect = 3e-76
Identities = 345/433 (80%), Gaps = 30/433 (7%)
Strand=Plus/Plus
Query 3 TTT-TCCATGTATGTTTACACGAT-GGGAGATCGTGATTACGCAAAGAAC-GTGTTGAAG 59
||| ||||||||||| |||||||| |||| ||||||| ||||| || | ||| ||||
Sbjct 414 TTTCTCCATGTATGTCTACACGATGGGGA-ATCGTGACTACGCTCAG-GCTGTGCTGAA- 470
Query 60 CT-GATTGATCCGGAGAAAGTATACTTTGGGGATCGAGTGATAACCAGAAACGAGAGTCC 118
| |||||||||| |||||||||||||||||||| |||| || |||||| ||||||||
Sbjct 471 ATGGATTGATCCGAAGAAAGTATACTTTGGGGATAGAGTCATTACCAGAGACGAGAGTGG 530
Query 119 TTATAT-AAAGACACTTGATCTTGTTTTGGCAGATGAGTGTGGAGTTGTGATTGTGGATG 177
|| | | ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 531 TT-TTTCGAAGACGCTTGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATG 589
Query 178 ATACT-GCTCAAGTTTGGCCTGATCACAAGAGGAACCTGCTAGAGATCACCAAATACAAT 236
| ||| | ||| |||||||||||||| ||||||| |||||| |||| ||||| |||| |
Sbjct 590 ACACTCG-TCATGTTTGGCCTGATCATGAGAGGAATCTGCTACAGATTACCAAGTACAGT 648
Query 237 TATTTTAGTGACAAGACAAGACGCGATGTGAAGTACTCGAAATCTTATGCAGAGGAGAAG 296
|| || || || | | | | ||| ||| | || |||||||| ||||||||||||
Sbjct 649 TACTTCAGAGATTATA---GTCATGAT---AAGGAGTCAAAATCTTACGCAGAGGAGAAG 702
Query 297 AGAGACGAGGGTCGAAACGATGGATCGTTGGGGAATGTTTTGAAAGTTATCAAGGAAGTT 356
||||||||| || | ||| | ||||| |||| |||||||||||||||| ||||||| |||
Sbjct 703 AGAGACGAGAGTAGGAACCAGGGATCATTGGCGAATGTTTTGAAAGTTCTCAAGGATGTT 762
Query 357 TATGAACGA-TTCTTT-AGCGGCGGAGTTGAGAAAGAGTTAGATATTGATTCAAAGGATG 414
| || || || ||| || |||||| ||||| || |||||| | ||||||| |
Sbjct 763 CACCAA-GAATT-TTTCAGAGGCGGAATTGAGGAA---TTAGAT-T-----CAAAGGACG 811
Query 415 TGAGGTTGTTGCT 427
||||| |||||||
Sbjct 812 TGAGGCTGTTGCT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5