BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950059
Length=293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54215.1 | Symbols: | Cysteine-rich protein | chr5:22010063... 377 2e-104
> AT5G54215.1 | Symbols: | Cysteine-rich protein | chr5:22010063-22010410
FORWARD LENGTH=252
Length=252
Score = 377 bits (204), Expect = 2e-104
Identities = 237/253 (94%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 21 ATGGGTTCCTCCAAATTGATGATTACATTCATCGTTGTTGCTATGCTGGCTATTTCTTCT 80
||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1 ATGGGTTCCTCCAGATTGATGATTACATTCATTGTTGTTGCTATGCTGGCCATTTCCTCT 60
Query 81 GACCTATTT-TCTGTTGAAACAAGAATCAGAGCGCAAGCTTCGCCTCCCACTTGTGGACG 139
||||| ||| |||||| ||| | ||||||| | ||||||| |||||||||||||||||||
Sbjct 61 GACCT-TTTCTCTGTTCAAATAGGAATCAGCGTGCAAGCTGCGCCTCCCACTTGTGGACG 119
Query 140 AGATTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACTGTACTGAGAAATTCTTGACACAAGACTGCGATAAATATTGTGTAGGTTTGTCTTA 179
Query 200 TAGAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCCCCGAAAACTTCTACATATCGTTT 259
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 TAAAAAAGGTGTTTGCATTCTATCCGAAGGACTTCCTCCGAAAACTTCTACATATCGTTG 239
Query 260 TTGTTGTTCGTAA 272
|||||||||||||
Sbjct 240 TTGTTGTTCGTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13522024481
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5