BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950073
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54340.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 721 0.0
AT5G54360.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 115 6e-25
> AT5G54340.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:22066831-22067565 FORWARD LENGTH=735
Length=735
Score = 721 bits (390), Expect = 0.0
Identities = 651/766 (85%), Gaps = 62/766 (8%)
Strand=Plus/Plus
Query 24 ATGGAGAACCAATCTATGTCTTCTTCAAGCTCCTGCC-CACACAAACATGATCAAAAACT 82
||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCT-CCACACACAAACATGATCAAAAACT 59
Query 83 CAAAAGTTCCGTTGTGGCCGTGGAGGTCCTGGAGGAG--G-AGACAGTGAACAATCCGGA 139
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 60 CAAAAGTTCCGTTGTGGCCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCC 119
Query 140 C-ATGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGGGAGTGTTCC-AGACCCCT 197
| | ||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 120 CCA-GTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCA-ACCCCT 177
Query 198 CATGCCCTTGGCGGTCACGGAACCACCGAGAAGGA---CCAAGAATTGGAGAGGCAGCAG 254
||||||||||||||||||||||||||| | ||||| || ||||||||||||||| |
Sbjct 178 CATGCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAATTGGAGAGGCA--A- 234
Query 255 AAGATCCAGATCGAGTCAAGGCTTTCTAACAAAGACAAGTCTAACTTGATCTTTGGTGGG 314
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 -----C-AGATCGAGTCAAGGCTTTCTAACAAAGACAAGTCTAACTTGCTCTTTGGTGGG 288
Query 315 TCTTCACAAGATGTTTTATCAAATGATAATCATCTTGGACTCTCTCTTGGTC-A--G--- 368
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 289 TCTTCACAAGATGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAG 348
Query 369 TCCATAGGAGGTAGCAGCAGCAGCAGCAACGTTTACCCGTTGGTTAATGTTGGAGTCAC- 427
||||||| ||||||||||||||||| ||||||| |||| ||| |||||||||||||| |
Sbjct 349 TCCATAGAAGGTAGCAGCAGCAGCAACAACGTTAACCCATTGCTTAATGTTGGAGTCCCT 408
Query 428 AGA----C-A----T--GAACATGAACAACTATAGCTCACATGATTTACCAA---ATGAT 473
||| | | | |||||||||||||||||||||||||| |||| ||| |||||
Sbjct 409 AGAGGAACCACAGATATGAACATGAACAACTATAGCTCACATGCTTTATCAACTGATGAT 468
Query 474 ATTAATCTTGACCTTACTCTCGGTCCTTCTAACTCCATAGGAGGCAGCAACGATAACAAC 533
||||||||||| |||||||| ||||| ||||| |||||||||| |||||| ||| ||
Sbjct 469 ATTAATCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGATAGCAACAATATCAT- 527
Query 534 ATAACTAACTCATATGTCAATGAGGAAGTCACTA-GAAAAACCACGAATATGATCATTCC 592
||| |||| | | || | | | || || || |||| ||||||||||
Sbjct 528 -TAA-TAAC--A-A---CACTAACTCA-TC-CTTCGATGG-----GAATCTGATCATTCC 572
Query 593 CGTGCGTCCCCGTGTGTCTAGATACCATTTTGTTGCTGGAAACCCGCTTGATTCAATCAC 652
||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 573 CGTTCGTCCTCGTGTGTCTAGATACCATTTTGTTGCTGGGAACCCCCTTGATTCAATCTC 632
Query 653 TAGAAATATTCCTGATCCTTCTATTGCTCCTCCTCATCGAAACACCTATCTTTTTCATGA 712
|||||| |||||| ||||||||| || |||||||| ||||| | |||||| ||||||
Sbjct 633 TAGAAACATTCCT---CCTTCTATTACTTTTCCTCATCTAAACATCAATCTTTCTCATGA 689
Query 713 TTCGTTTTCTTTACAAGAGAATGGCTCGGGCTCAAGTCACTCATAA 758
|||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 690 TTCGTTTTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 735
> AT5G54360.1 | Symbols: | C2H2-like zinc finger protein | chr5:22071862-22072674
FORWARD LENGTH=813
Length=813
Score = 115 bits (62), Expect = 6e-25
Identities = 76/82 (93%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 30 AACCAATCTATGTCTTCTTCAAGCTCCTGC-CC--ACACAAACATGATCAAAAACTCAAA 86
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 7 AACCAATCTATGTCTTCTTCAAGCTCCTCCTCCCCACACAAACATGATCAAAAACTCAAA 66
Query 87 AGTTCCGTTGTGGCCGTGGAGG 108
||| || |||||||||||||||
Sbjct 67 AGTGCCCTTGTGGCCGTGGAGG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5