BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950090
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54480.1 | Symbols: | Protein of unknown function (DUF630 a... 2287 0.0
> AT5G54480.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr5:22118004-22120166 FORWARD LENGTH=2163
Length=2163
Score = 2287 bits (1238), Expect = 0.0
Identities = 1539/1677 (92%), Gaps = 49/1677 (3%)
Strand=Plus/Plus
Query 548 TGATATACTCGGTTTGTAC-GGTCCCGTGTATAACACGCAGCAGTGCGAATTTATCAAAC 606
||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||| ||
Sbjct 498 TGATATACTCGGTTTCTACAAAT-CCGTGTATAACATGCAGCAGTGCGAAATTATCGAA- 555
Query 607 CT-GATCAAAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAGTTAGGGAGAGAGAA 665
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 556 CTGGATCATAGAGATGATGAGGTTGAGAGTGATGGATTTAGAGAAATTAGGGAGAGAGAA 615
Query 666 GGGATTCCTGATTTGGAACCTGAAAGTGATCATAATAGTCT--T--------AT-aaga- 713
|||||||||||||||||||||||||||||| |||||||||| | || || |
Sbjct 616 GGGATTCCTGATTTGGAACCTGAAAGTGATTATAATAGTCTGATAAGGAAGAATAAAAAG 675
Query 714 aagaaccaaaagaag-a-ca-aagaagaa-g--a-ag-aag-------GTTGCAAGTGAA 758
||||| |||||||| | | |||||||| | | || ||| ||||||||||||
Sbjct 676 AAGAATAAAAAGAAGAAGAAGAAGAAGAATGTTAGAGAAAGCTCTTCTGTTGCAAGTGAA 735
Query 759 ATTGATAAGCAAGATGTTGAAGCAAACACTTGTAATGGAGATGTTGCAGATGAGACTGAT 818
|||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 736 ATTGATAAGCGAGATGTTGAAGCGAATACTTGTAATGGTCAAGTTGCAGATGAGACTGAT 795
Query 819 AATTCTAGTGGAGCTTGCGAGCGAGAGACAGCAAAA-ACTCCAGAGATTGTTACTGAAGA 877
||||||| || |||||| | || |||||||| |||| ||||||||||||||||| |||||
Sbjct 796 AATTCTAATGAAGCTTGTGCGCAAGAGACAG-AAAACACTCCAGAGATTGTTACGGAAGA 854
Query 878 AGTGACAAGATCAGATGAGGAAGTTGAAGAAGAGACAAGATCAGATGAGGAAGTTTCTGA 937
|||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 855 AGTGACGAGATCAGATGAGGAAGTTGAAGTAGTGGCAAGATCAGATGAGGAAGTTTCTGA 914
Query 938 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACTGA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 915 TGAAGCGTATGAGTCTTCTTCTTCTTGTTTTTCGGAATCTTCTGGTTCGGGTTTGACGGA 974
Query 998 TCTAAGGAATGTTGTAGAAAGGATCACTCGTATATGCGAGAAAGCTGTGGGTGATAGTGA 1057
||||||||| || || |||||||||| | ||||||||| |||||||| |||| |||||||
Sbjct 975 TCTAAGGAAGGTAGTGGAAAGGATCAATAGTATATGCGGGAAAGCTGCGGGTAATAGTGA 1034
Query 1058 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTCATCATCAACCTTTAGGATCTCAATT 1117
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1035 AGTCTCTGAGTTGCTTGAAGTAAGCAGAGTTGTTTATCATCAACCTTTAGGATCTCAATT 1094
Query 1118 CAAGGGATTTGCTTCAAGGGTACTTGGTGGTACCGGGAATTCGACTCGTGATTTGATTTT 1177
|||||||||||||||||| ||| ||||| || |||||| | |||||||||||||| ||||
Sbjct 1095 CAAGGGATTTGCTTCAAGAGTAATTGGTAGTTCCGGGACTACGACTCGTGATTTGGTTTT 1154
Query 1178 AAAGCGCCGTTTTCGCTTAGATGATGTTGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1237
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1155 AAAGCGCCGTTTTCGCTTAGATGATCTCGCTGTTTCACTCTCTATGACATTAGAGAAGCT 1214
Query 1238 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAG-TAGAAGAAAAGCTTAGGGTTT 1296
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1215 TTATATGTGGGAAAAGAAGCTTCACGCAGAAGTTACAGCT-GAAGAAAAGCTTAGGGTTG 1273
Query 1297 CTTATGATAAAGCGTACAAGATTCTGAACAATCTTGATCAAACCGGAGCAGAATCGAGCG 1356
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1274 CTTATGAAAAAGCGTACAAGATTCTGAACAATCTTGATCAAAACGGAGCAGAATCTAGTG 1333
Query 1357 AGATTTACGAGGCGGAAACTGTGGTTAAACTCTATTTATCTAAGATTAATGTTTCGGTTC 1416
|| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1334 AGCTTTACGAGGCGGAAACTTTGGTTAAACTCCATTTATCTAAGGTTAATGTTTCGGTTC 1393
Query 1417 GAGCGGTTGAATCGATTTCCATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GAGCGGTTGAATCGATTTCGATGAGAATTCATAAGATAAGAGACGAAGAGCTTTCGTTTC 1453
Query 1477 AGGTGATTGAGATCATAAACGGATTCAAAAGAATGTGGAGATTCTTGGCGAAATGTCACC 1536
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1454 AAGTGATTGAGATCATTAACGGATTCAAAACAATGTGGAGATTCTTGGCGAAATGTCACC 1513
Query 1537 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAATGGAT 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1514 ATAAGCAGTTTCGAGTGATTGCGAGAAGCAAGTCTTGTGTTCACATTGTTGAAAACGGAT 1573
Query 1597 CGAGCTCGAGGAAAGCTACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1656
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CGAGCTCCAGGAAAGCCACGCAGCAAGTCGAAAAACAGATTAGAAGATACAGAGAATCTT 1633
Query 1657 TGAAAGGTTACATTGATTCTCAGAGAGGTTTCGTTAAGCTCTTAAACGAATGGCTTAGCC 1716
||||||||||||||||| | || ||||||||||||||||| |||||||||||||||| ||
Sbjct 1634 TGAAAGGTTACATTGATGCACACAGAGGTTTCGTTAAGCTTTTAAACGAATGGCTTAACC 1693
Query 1717 GAAACATCATGGAGGATGATGAAACCGAGA-TCGAGGCTCCTGAGATATTTAGGGTTTGC 1775
||| |||||||||||| ||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1694 GAATCATCATGGAGGACGATGAAACCGAGACT-GAAGCTCCTGAGATATTTAGGGTTTGC 1752
Query 1776 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGATGA-GATTAAAGTGTTGAGTGCTGTTGA 1834
||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 1753 AGCGAGTGGTTAAGAGAGATTGAGAATGTGGAT-ACGATTAAAGTGTTGAGTGTTGTTGA 1811
Query 1835 AGAAATGAGATTAAGATTTCGAGGGTTAGGGTTTAAGCAAGTagaggaagagaaacagag 1894
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1812 AGAAATGAGATTAAGATTTCAAGGGTTAGGGTTTAAGCAAGTAGAGGAAGAGAAACAGAG 1871
Query 1895 gttgagaacagagagattgtctaaggagttagagaagaagaCGAAGGAGTTGGAGGAGAT 1954
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GATGAGAACAGAGAGATTGTCTAAGGAGTTAGAGAAGAAGACGAAGGAGTTGGAGGAGAT 1931
Query 1955 CCGGGGAACGGCGCATGGTTCTGGTCCGACGGCGAATATGATGGTGGGACCTGAGTTGTT 2014
||||||||| | | |||||| |||||||| |||||||| | || ||| ||||||||
Sbjct 1932 TCGGGGAACGA-G-A-GGTTCTAGTCCGACGTCGAATATGGT--TGA-ACCGGAGTTGTT 1985
Query 2015 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAGCATGAGAGAATGATAAGAGAGCT 2074
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 1986 GTTTTTGAGAGAGAGTGTGACGCAAGAAACAGAAAAACATGAGAGATTGATAAGAGAGTT 2045
Query 2075 AAACGACGCCGTATCGATGAGTATGCAAGAGTGTTTGGTTCCTGTCTTTGAGGCTTTGG- 2133
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2046 AAACGACGCCGTATCGATGAGTTTGCAAGAGTGTATGGTTCCTGTCTTTGAGGCTTTGGG 2105
Query 2134 AGGATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATTAGCA-TCGTTTCCACA 2189
|| |||||||||||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct 2106 AG-ATTTTTGTTTTGCTAATTTTAAAGCATATCAGAACATT-GTAATCGTTACCACA 2160
Score = 726 bits (393), Expect = 0.0
Identities = 459/491 (93%), Gaps = 4/491 (1%)
Strand=Plus/Plus
Query 21 ATGGGAATCGTTGCTTCCAAGGGAGATAGTAACACTCCATTGTTGAATCTGTGTAAGGAG 80
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGGTATCGTTGCTTCCAAGGGAGATAGTAATACTCCATTGTTGAATCTATGTAAGGAG 60
Query 81 AGGAAAGAATTGATCAGAGCAGCTAGAGATGGTCGTTATCACTTAGCGAGATCTCATCTT 140
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AGGAAGGAATTGATCAAAGCAGCTAGAGATGCTCGTTATCACTTAGCGAGATCTCATCTT 120
Query 141 CTTTACTTTAAATCTCTTTTAGATTTTAGCAAAGCTCTTAATCAGTTTGTTCATAAGGAT 200
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 121 CTTTACTTTAAATCTCTTTTAGATTTCAGCAAAGCTCTTAAACAGTTTCTTCATAAGGAT 180
Query 201 TTGGTTGTGATTCCGTATTCGGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGTTGTGATTCCGTATTCCGATGATGATTCGTCTAGTAGTGATATAATTTGTTCTGGA 240
Query 261 TCAGATTCAGACTCGGATACGGATTCTGATTCGGGTTCAGATTCTGATTGTTTAGTCTGT 320
|||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||
Sbjct 241 TCAGATTCAGACTCGGATACGGATTCTGATTCAGATTCTGATTCTGATTGTATAGTCTGT 300
Query 321 GATCAATCTCAAACAGCTCCGTTGAGCAACAATGAGGATCAGAATCCTCGAAA-CCC-TG 378
|||||| |||||||||||||||||||||| ||||| ||||||| || ||||| ||| ||
Sbjct 301 GATCAACCTCAAACAGCTCCGTTGAGCAATAATGACGATCAGAGTCAGCGAAAACCCGTG 360
Query 379 AGTTTGGAGATGGAACTTGCGGTTCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 438
||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 -GTT-GGTGATGGAACTTGCGGTGCAAGTAACAATGGTCAAGAGGGTATGGAGAAGTCAA 418
Query 439 GAGAAGATTTAGGGTTTGAGTGGAAACAGTTCGTTAGTGATCCAAGTGAAGAAGAGGTGA 498
|||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||
Sbjct 419 GAGAAGGTTTAGGGTTTGAGGGGACACAGTTCGTTAGTGATCCAAGTGAAGACGAGATGA 478
Query 499 AAGGTTCGCAA 509
|| ||||||||
Sbjct 479 AAAGTTCGCAA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110943204450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5