BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950095
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54520.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2069 0.0
> AT5G54520.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:22146514-22149120 REVERSE LENGTH=1672
Length=1672
Score = 2069 bits (1120), Expect = 0.0
Identities = 1320/1416 (93%), Gaps = 16/1416 (1%)
Strand=Plus/Plus
Query 7 TCGATTTCAAGTTTCCGATGGATCTTATTTGCAATTCGTATGGCAATGACTCCGACGACG 66
|||| ||||| |||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 15 TCGACTTCAACTTTCCGATGGATCTCATCTGCAATTCGTATGCCAATGACTCCGACGACG 74
Query 67 AACCTGAACCAGTGTCCAATGAGCGTTTAACATCTGGAATCGCCACCGCACCGTCTATTC 126
||||||| |||||| |||||||||| ||||||||| ||||||| | |||||||| ||||
Sbjct 75 AACCTGAGCCAGTGACCAATGAGCGATTAACATCTAAAATCGCCGCAGCACCGTCAATTC 134
Query 127 CTTCGAAGCGTCCATATCCAGTCCCGGAGGAGCGACATTCCAAACCATCGCGTAGACCGT 186
|||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 135 CTTCTAAGCGTCCATATCCAGTCCCGGAGGAGCGACAATACAAACCACCGCGTAGACCGT 194
Query 187 ATCCTCCTCAAGGTTCCTATTCTG-ATCCTC-CACCGAGCTCTTCGGTTTC---A---GT 238
||||||| || ||||||||||| | || ||| ||| ||||| ||| |||| | ||
Sbjct 195 ATCCTCCACACGGTTCCTATTCGGAAT-CTCAAACC-AGCTCGTCGTTTTCAATACCGGT 252
Query 239 GCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCTAAGAGAGAGAGATCACTTCTAGC 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 253 TCCGGTTCCGGTTCCGGTTCCAGGCCGGTACGTATCCAAGAGAGAGAGATCACTTCTAGC 312
Query 299 CTCCGTTTCAACGATTCCGACTCAAGATCAAAGTTCCGATTTGAATCAGAAACCCTCTAG 358
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | |||
Sbjct 313 CTCCCTTTCAACGATTCCGACTCCAGATCAAAGTTCCGATTTGAGTCAGAAACCTTATAG 372
Query 359 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTGCCTCGCCATGTTCTATCTTC 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 373 CTCTCCTACTGTTCTTGGGAGCATCTCAGATTCTGATGTACCTCGCCATGTTCTATCTTC 432
Query 419 GGTTACACATCGACCAAAAGGATCCTCGTTGCGAACCGAAATGCCTAGTAGAATGTCGAT 478
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 433 GGTTAGACATAGACCAAAAGGATCCTCGTTGCAAACCGAAATGCCTAGTAGAATGTCGAT 492
Query 479 TTCGTTGACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTCGTTAACCGGCCATACAAAGGCTGTTACTGCTATTGATTGGTCTACAAGTCATGTTCA 552
Query 539 TCTTCTTGCTTCTGCGGGGCTTGATAGTGTC-GCTTACGTGTGGAATGTTTGGAGCAATG 597
||||||||||||||||||||||||| ||| | | ||||||||||||||| ||||| ||||
Sbjct 553 TCTTCTTGCTTCTGCGGGGCTTGATGGTG-CTGTTTACGTGTGGAATGTGTGGAGTAATG 611
Query 598 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATAAGAAGAAAGTACGGGCTTTTCTCCATCATAATGCACCGGTTAAAGATGTGAAGTGGT 671
Query 658 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCATGTCGAGACTATTTGATG 717
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 672 CAAAGCAAGGGTTATCGTTGCTTTCTTGTGGATATGACTGCACGTCGAGACTGTTTGATG 731
Query 718 TTGAAAGAGGGGTAGAGATACAGTCTTTCAAGGAGGATCAGGTTATTGGAGTTGTTAAGT 777
|||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||||||
Sbjct 732 TTGAAAGAGGGGTAGAGACACAATCTTTCAAGGAGGATGAAGTTGTTGGAGTTGTTAAGT 791
Query 778 T-CAATCCAGATCATTGTAGCGTGTTTCTTTCTGGAGGATCAAAGGGAAGTCTTAGATTA 836
| || ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 792 TTCA-TCCAGATAATTGTAACGTGTTTCTTTCTGGTGGATCAAAGGGAAGTCTTAGATTA 850
Query 837 TGGGACATTAGGGCCAACAAAATCGTGCATGAATACATCCGAGATCTTGGGCCAATTCTT 896
||||||||||| ||||| ||| ||||||||||||| | ||||||||||||||||||||
Sbjct 851 TGGGACATTAGAGCCAATAAATTCGTGCATGAATATGTTAGAGATCTTGGGCCAATTCTT 910
Query 897 GATGTTGAGTTTATCGCGGGTGGGAAGCGGTTTATCTCTTCAAGTGATGTGTCTGGCAGA 956
|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 911 GATGTTGAGTTTATCGCGGGTGGGAAGCAGTTTATCTCGTCAAGTGATGTTTCTGGCAGA 970
Query 957 AATATAAGTGAGAATGCGGTTATGGTTTGGGATATTTCGAGAGAGGTTCCTCTATCTAAT 1016
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 971 AATATAAGTGAGAATGCTGTTATAGTTTGGGATATTTCGAGAGAGGTTCCTTTATCTAAT 1030
Query 1017 CAGGTCTATGTAGAAGCATACACATGCCCCTGCATCAAACGTCACCCGCAAGACCCAGTC 1076
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1031 CAGGTCTATGTAGAAGCATACACATGCCCTTGCATCAAACGTCACCCGCAAGACCCAGTC 1090
Query 1077 TTCATCGCCCAATCACACGGGAACTACACTGCAATCTTCTCAACAAGCCCACCTTTCAAG 1136
|||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1091 TTCATCGCGCAATCACACGGGAACTACACAGCAATCTTCTCAACAAACCCACCTTTCAAA 1150
Query 1137 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTCAACAAATACAAGAGATTCGAAGGTCACTGGGTTGCAGGTTTCCCAATCAAATGCAAC 1210
Query 1197 TTCAGCCCGGACGGAGAAACCTTAATCTCTGGCTCATCTGACGGTTCCATATACATGTAC 1256
||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1211 TTCAGCCCGGATGGAGAAACCTTAGCCTCTGGCTCATCTGACGGTTCTGTATACATGTAC 1270
Query 1257 -AGCTGCAAATCCACTGAGCTCATTAAGAAGCTCAAGGCTTATGAACAGCCCTGCGTTGA 1315
| || ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1271 GA-CTACAAATCCACTGCGCTCATTAAGAAGCTCAAAGCTTATGAACAGCCCTGCGTTAA 1329
Query 1316 TGTGTCATACCACCCAGTTTTGCCTAACGTGGTCGCAGCTTGTAGCTGGAATGGACAAGT 1375
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1330 TGTGTCATACCACCCCGTTTTACCTAACGTGGTCGCGGCTTGTAGCTGGAATGGACAAGT 1389
Query 1376 CTCTGTTTTTGAGTGATCCCACAATGGTTAGTATTA 1411
||||||||||||||||| ||||||||||||||||||
Sbjct 1390 CTCTGTTTTTGAGTGATTCCACAATGGTTAGTATTA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5