BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950099 Length=821 Score E Sequences producing significant alignments: (Bits) Value AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:2216... 686 0.0 AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538 FO... 355 3e-97 > AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235 REVERSE LENGTH=1608 Length=1608 Score = 686 bits (371), Expect = 0.0 Identities = 401/416 (96%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 236 ATGGAACAGGGGAAGTGAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 295 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 ATGGAACAGGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 412 Query 296 TTTTAGCCAAACGAATCAAACCTTACGTGACATTGTATCACTGGGATCTCCCACAAGCTT 355 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 413 TTTTAGCCAAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCT 472 Query 356 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTCGTGGATGATTTCGAGCGTTATG 415 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 473 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATG 532 Query 416 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 592 Query 476 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCAC 535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 593 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCAC 652 Query 536 TTCTGGGACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTC 595 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 653 TTCTGGGACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTC 712 Query 596 ATAACATTCTCTTGTCTCATGCTGCAGCTTACCACACCTACCAGAGAAACTTCAAG 651 |||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||| Sbjct 713 ATAACATTCTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAG 768 Score = 246 bits (133), Expect = 2e-64 Identities = 186/210 (89%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 25 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCATTCTTGGTCGTCTCCTTCGTC 84 |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| Sbjct 1 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTA 60 Query 85 CCTCTTGATCATGTTTCTTCAGAATCTATCAGCAGAGCAGATTTTCCAGATGGGTTTGTA 144 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 61 CCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTA 120 Query 145 TTCGGAACAGCTTCGTCAGCATACCAGAAC-ATC-AG-T-TCGAAGGA-GCTGTA-CAAA 198 |||||||||||||| ||||| |||||| | | || | | ||| || | | | |||| Sbjct 121 TTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGT-GAAAGAAG--GAAACAAA 177 Query 199 GGAGAAAGCATATGGGACACTTTCACGAAG 228 |||||||||||||||||||||||||||||| Sbjct 178 GGAGAAAGCATATGGGACACTTTCACGAAG 207 Score = 196 bits (106), Expect = 2e-49 Identities = 116/121 (96%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 679 AAGGAGAAACAACGTGGTCAGATCGGGATATCATTAAATGCAAAATGGTATGAGCCAATG 738 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 766 AAGGAGAAACAACGTGGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATG 825 Query 739 TCTGATTGTGATGAGGACAATGATGCAGCTCGTAGAGCAATGGATTTTGGGATTGGACGG 798 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 826 TCTGATTGTGATGAGGACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGG 885 Query 799 T 799 | Sbjct 886 T 886 > AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538 FORWARD LENGTH=1204 Length=1204 Score = 355 bits (192), Expect = 3e-97 Identities = 202/207 (98%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 423 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGG 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGG 662 Query 483 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCACTTCTGGG 542 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 661 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGG 602 Query 543 ACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTCATAACAT 602 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 601 ACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACAT 542 Query 603 TCTCTTGTCTCATGCTGCAGCTTACCA 629 ||| |||||||||||||| |||||||| Sbjct 541 TCTGTTGTCTCATGCTGCTGCTTACCA 515 Score = 261 bits (141), Expect = 8e-69 Identities = 162/172 (94%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 1 TTTCTCTATTCATGCGACCC-AAAAATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTT 59 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 926 TTTCTCTATTCATGCGACCCAAAAAATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTT 867 Query 60 TCCATTCTTGGTCGTCTCCTTCGTCCCTCTTGATCATGTTTCTTCAGAATCTATCAGCAG 119 ||| ||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||| Sbjct 866 TCCGTTCTTCGTCGTCTTCTTCGTACCTCTTGATCACGTTTCTTCAGAATCTATCAGCAG 807 Query 120 AGCAGATTTTCCAGATGGGTTTGTATTCGGAACAGCTTCGTCAGCATACCAG 171 |||| ||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 806 AGCAAATTTTCCAGATGGATTTGTATTCGGAACAGCTTCTTCAGCTTACCAG 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39986381012 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5