BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950099
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:2216... 686 0.0
AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538 FO... 355 3e-97
> AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235
REVERSE LENGTH=1608
Length=1608
Score = 686 bits (371), Expect = 0.0
Identities = 401/416 (96%), Gaps = 0/416 (0%)
Strand=Plus/Plus
Query 236 ATGGAACAGGGGAAGTGAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATGGAACAGGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTC 412
Query 296 TTTTAGCCAAACGAATCAAACCTTACGTGACATTGTATCACTGGGATCTCCCACAAGCTT 355
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 413 TTTTAGCCAAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCT 472
Query 356 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTCGTGGATGATTTCGAGCGTTATG 415
||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 473 TAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATG 532
Query 416 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGC 592
Query 476 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCAC 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 CTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCAC 652
Query 536 TTCTGGGACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTC 595
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 653 TTCTGGGACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTC 712
Query 596 ATAACATTCTCTTGTCTCATGCTGCAGCTTACCACACCTACCAGAGAAACTTCAAG 651
|||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 713 ATAACATTCTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAG 768
Score = 246 bits (133), Expect = 2e-64
Identities = 186/210 (89%), Gaps = 9/210 (4%)
Strand=Plus/Plus
Query 25 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCATTCTTGGTCGTCTCCTTCGTC 84
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTA 60
Query 85 CCTCTTGATCATGTTTCTTCAGAATCTATCAGCAGAGCAGATTTTCCAGATGGGTTTGTA 144
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTA 120
Query 145 TTCGGAACAGCTTCGTCAGCATACCAGAAC-ATC-AG-T-TCGAAGGA-GCTGTA-CAAA 198
|||||||||||||| ||||| |||||| | | || | | ||| || | | | ||||
Sbjct 121 TTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGT-GAAAGAAG--GAAACAAA 177
Query 199 GGAGAAAGCATATGGGACACTTTCACGAAG 228
||||||||||||||||||||||||||||||
Sbjct 178 GGAGAAAGCATATGGGACACTTTCACGAAG 207
Score = 196 bits (106), Expect = 2e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 679 AAGGAGAAACAACGTGGTCAGATCGGGATATCATTAAATGCAAAATGGTATGAGCCAATG 738
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 766 AAGGAGAAACAACGTGGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATG 825
Query 739 TCTGATTGTGATGAGGACAATGATGCAGCTCGTAGAGCAATGGATTTTGGGATTGGACGG 798
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 826 TCTGATTGTGATGAGGACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGG 885
Query 799 T 799
|
Sbjct 886 T 886
> AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538
FORWARD LENGTH=1204
Length=1204
Score = 355 bits (192), Expect = 3e-97
Identities = 202/207 (98%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 423 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGG 662
Query 483 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCACTTCTGGG 542
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGG 602
Query 543 ACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTCATAACAT 602
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACAT 542
Query 603 TCTCTTGTCTCATGCTGCAGCTTACCA 629
||| |||||||||||||| ||||||||
Sbjct 541 TCTGTTGTCTCATGCTGCTGCTTACCA 515
Score = 261 bits (141), Expect = 8e-69
Identities = 162/172 (94%), Gaps = 1/172 (1%)
Strand=Plus/Minus
Query 1 TTTCTCTATTCATGCGACCC-AAAAATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTT 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 926 TTTCTCTATTCATGCGACCCAAAAAATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTT 867
Query 60 TCCATTCTTGGTCGTCTCCTTCGTCCCTCTTGATCATGTTTCTTCAGAATCTATCAGCAG 119
||| ||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 866 TCCGTTCTTCGTCGTCTTCTTCGTACCTCTTGATCACGTTTCTTCAGAATCTATCAGCAG 807
Query 120 AGCAGATTTTCCAGATGGGTTTGTATTCGGAACAGCTTCGTCAGCATACCAG 171
|||| ||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 806 AGCAAATTTTCCAGATGGATTTGTATTCGGAACAGCTTCTTCAGCTTACCAG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5