BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950104
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 451 3e-126
AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits... 147 2e-34
> AT5G54100.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:21953787-21956564 REVERSE
LENGTH=1518
Length=1518
Score = 451 bits (244), Expect = 3e-126
Identities = 341/385 (89%), Gaps = 18/385 (5%)
Strand=Plus/Plus
Query 109 ACCAGTTACCAAATCAACAAACCGACGCCGTCAAAATCCTTCGCCTCC-GGATATCTCCA 167
||||| ||||||||||| ||||| ||||||||||||||||| | ||| || | ||||||
Sbjct 209 ACCAGCTACCAAATCAATAAACCTTCGCCGTCAAAATCCTTCACTTCCAGGCT-TCTCCA 267
Query 168 CCAAT-CT--TCAGCTGCTTCTCCTCTGCAACAACTTTCCGGCGTCCGTAACTTCTCATC 224
||||| || || || | | |||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 268 CCAATCCTCCTCCGCCGGTACTCCTCCGCAACAACTTTTCGGCGCCCGTAGCTTCTCATC 327
Query 225 TCCCAGCAGTGATTTCAACAGCTACAACATTAATCCGCCGTCTAACTGGGGAATCCGAAT 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 328 TCCCAGCAGTGATTTCAACAGCTACCACATTAATCCGCCGTCTAACTGGGGAATCCGAAT 387
Query 285 CGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCGCAAGACTTTGCC 344
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 388 CGTGCCGGAGAGGAAAGCTTGTGTGATTGAGCGGTTTGGTAAATTCCACACGACTTTGCC 447
Query 345 GGCGGGGATTCACTTTCATGTTCCGCTTGTGGATTGTATTGCTTATGT------------ 392
||||||||||||||| | ||||||| |||||||| |||| ||||||||
Sbjct 448 GGCGGGGATTCACTTCCTTGTTCCGTTTGTGGATCGTATCGCTTATGTTCATTCTCTAAA 507
Query 393 G-AAGAAGCGATTCCTATTGGTAATCAGACTGCGACCACAAAGGATAACGTTAGCATCTA 451
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 508 GGAAGAAGCGATTCCTATTGGTAATCAGACTGCGATTACAAAGGATAACGTTAGCATCCA 567
Query 452 CATCGATGGTGTTCTCTACGTTAAG 476
|||||||||||||||||||||||||
Sbjct 568 CATCGATGGTGTTCTCTACGTTAAG 592
> AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21071944-21074438
FORWARD LENGTH=1244
Length=1244
Score = 147 bits (79), Expect = 2e-34
Identities = 102/113 (90%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 CAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGGATACatatatatatataATGCAT 60
|||||||||||||||||||||||||||||| ||||| |||||||||| || ||||| |||
Sbjct 903 CAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAG-ATACATATATCTAGATAATCCAT 961
Query 61 ATACCGAAAGCCGCCTTTTCGAATCAGAAGTGTGTCAAATATATTACTACCAG 113
||||||||||| | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 962 ATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5