BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950105

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:2216...   124    4e-28


> AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235 
REVERSE LENGTH=1608
Length=1608

 Score =  124 bits (67),  Expect = 4e-28
 Identities = 73/76 (96%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  72   AATGACATAGACCTGCTGAAAGATCTGAGAATGGATGCTTACAGATTCTCGATATCTTGG  131
            ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  277  AATGACATAGACCTGATGAAAGATCTGAGAATGGATGCTTACAGATTCTCTATATCTTGG  336

Query  132  TCAAGAATATTCACTA  147
            |||||||||||| |||
Sbjct  337  TCAAGAATATTCCCTA  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5