BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950107
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 817 0.0
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 231 4e-60
> AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171216-22172977 FORWARD LENGTH=908
Length=908
Score = 817 bits (442), Expect = 0.0
Identities = 482/502 (96%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 11 AATCAATTGAATCTATGGCGATGGCTATGAGACTCCCGGCGATATCTAGAGCGGTGACGG 70
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 103 AATCAATTGAATCTATGGCGATGGCTATGAGACTTCCAGCGATATCTAGAGCTGTGACGG 162
Query 71 AAGTGGCTTCGGCTCCGGTTGGTTTGAGACGGCTGTTCTGTTCAAATGCTTCAAGGTTCT 130
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 163 AAGTAGCTTCAGCTCCGGTTGGTTTGAGACGACTGTTCTGTTCAAATGCTTCAAGGTTCT 222
Query 131 CTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCA 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCA 282
Query 191 CCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAAGGACTTAGGACCGCGT 250
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 283 CCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAAGGACTAAGGACTGCTT 342
Query 251 TTGCTCAGTTTGGAGAAGTTGCTGATGCTAAGGTTGTCACAGACAGAGTCTCAGGATATT 310
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 343 TTGCTCAGTTTGGAGAAGTTGCTGATGCTAAGGTTGTCACAGACAGAGTATCAGGATATT 402
Query 311 CCAAAGGGTTTGGATTTGTTAGATATGCCACCTTAGAAGATTCTGCAAAAGGCATAGCTG 370
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 403 CCAAAGGGTTTGGATTTGTTAGATATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTG 462
Query 371 GAATGGATGGGAAGTTTCTTGATGGCTGGGTCATATTCGCAGAGTATGCAAGACCAAGAG 430
||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 463 GAATGGACGGGAAGTTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAG 522
Query 431 AGCAATCGCAGCCATATCAACCTCAGAACAACATGTCTCGTCCTCCATACTATGGTAACC 490
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGCAATCACAGTCATATCAACCTCAGAACAACATGTCTCGTCCTCCATACTATGGTAACC 582
Query 491 GCTAGAGAAACAGCTTTGTTCG 512
||||||||||||| ||| ||||
Sbjct 583 GCTAGAGAAACAGTTTTCTTCG 604
> AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576465-3580525 FORWARD LENGTH=2685
Length=2685
Score = 231 bits (125), Expect = 4e-60
Identities = 194/224 (87%), Gaps = 18/224 (8%)
Strand=Plus/Plus
Query 11 AATCAATTGAATCTATGGCGATGGCTATGAGACTCCCGGCGATATCTAGAGCGGTGACGG 70
|||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 5 AATCCATTGAATCTATGGCGATGGCTATGAGACTTCCAGCGATATCTAGAGCTGTGACGG 64
Query 71 AAGTGGCTTCGGCTCCGGTTGGTTTGAGACGGCTGTTCTGTTCAAATGCTTCAAGGTTCT 130
|||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 AAGTAGCTTCGTCTCCGGTTGGTTTGAGACGACTGTTCTGTTCAAATGCTTCAAGGTTCT 124
Query 131 CTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCA 190
||||| ||||||||| | | | |||||| |||||||||||||||||
Sbjct 125 CTTTTCTGTCTCCAC---C-G-------------G-CTCGTCGTCAGGCTGAACCTAGCA 166
Query 191 CCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAA 234
||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 167 CCAATCTCTTCCACTCCGGGCTTAGTAAGCGCATCACTTCTGAA 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24614732030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5