BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950113
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54630.1 | Symbols: | zinc finger protein-related | chr5:22... 2193 0.0
AT4G27240.1 | Symbols: | zinc finger (C2H2 type) family protei... 616 3e-175
> AT5G54630.1 | Symbols: | zinc finger protein-related | chr5:22192499-22194308
REVERSE LENGTH=1575
Length=1575
Score = 2193 bits (1187), Expect = 0.0
Identities = 1373/1459 (94%), Gaps = 28/1459 (2%)
Strand=Plus/Plus
Query 16 CAACAATGgaagattcaagcaaaaaaagccaaaagaacaagaagaagaagaacaaaaaca 75
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 44 CAACAATGGAAGATTCAAGCAAAAAAAGCC-----AA-AAGAAGAAGAAGAACAAAAGCA 97
Query 76 agaacaacaTCCCAACTGTTTGGTTCTCACTCAAGAAATCTCTCCATTGTAAATCCGAAC 135
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 98 AGAACAACATCCCAACTGTTTGGTTCTCACTCAAGAAATCCCTCCACTGTAAATCCGAAC 157
Query 136 CATCGGATGTCCACGACCCTAA-ATCCACAACT-AA-A-CAACAACACCTCTCCACAATC 191
|||| |||||||||||||| || |||||| ||| || | |||||||||||||||||||||
Sbjct 158 CATCTGATGTCCACGACCC-AATATCCACCACTAAACAGCAACAACACCTCTCCACAATC 216
Query 192 TCTACCAAGAAAATCTCCGGCGTATCCTCCGGTGGCGCAGCCGTATGCGGTGGTGGTTTA 251
|| |||||||||||||||||| |||| ||||| || || |||||||||||||||||||||
Sbjct 217 TCCACCAAGAAAATCTCCGGCATATCATCCGGCGGAGCCGCCGTATGCGGTGGTGGTTTA 276
Query 252 TCAGGATGCTCAAGATCAATAGCAAATCTCAAAGACGTTATCCATGGAAGCAAAAGACAT 311
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 277 TCAGGATGTTCAAGATCAATAGCAAATCTCAAAGACGTAATCCATGGAAGCAAAAGACAT 336
Query 312 TTCGAGAAACCACCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTCAATCCT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 337 TTCGAGAAACCACCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTAAATCCT 396
Query 372 ATAACTCATGAAGTTATCCTTAGTAACTCAACTTGTGAGCTTAAGATCACTGGTGTTGGA 431
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 ATAACTCATGAAGTTATTCTTAGTAACTCAACTTGTGAGCTTAAGATCACTGGTGTCGGA 456
Query 432 GACATGGCTTCACCTGTCGGAGCTGCAGATTCCGGCGGTGGAGGTGGCGGCGGAGGAGGA 491
||||||||||||||||||||||| || ||||||||| |||||| ||| || |||
Sbjct 457 GACATGGCTTCACCTGTCGGAGCAGCGGATTCCGGC---GGAGGT---GGC---GGTGGA 507
Query 492 GGAAATGGTCGGTCTACGACTTATGTAGGGATGCTGAGACCAGGAACACCGTTGCATTAT 551
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 508 GGAAATGGTCGGTCTACGACTTATGTAGGGATGCTTAGACCAGGAACACCGATGCATTAT 567
Query 552 CTTAACCATTCAGCTTCTTACCGGAGCCAAACGAGAAAGGGTTCGTTCGCTTTGTCggag 611
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 568 CTTAACCATTCAGCTTCTTACAGGAGCCAAACAAGAAAGGGTTCGTTTGCTTTGTCGGAG 627
Query 612 agaga---a--a-gaggaggaggaggagaAGGGTTAGGGTTTCACACAAACAGGAGAGTT 665
||||| | | ||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 628 AGAGATCGAGGAGGAGGAGGAGGAGGAGAAGGGTTAGGGTTTCATACAAACAGAAGGGTT 687
Query 666 TCATTGGAGATGAACAGAGAAAACGTCATTAATGGAGGCAACAATTCCTCTGTTTCTTGT 725
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 688 TCATTGGAGATGAACAGAGAATCCACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGT 747
Query 726 CATAAATGTGGTGAACAGTTCAATAAACTTGAAGCTGCTGAAGCTCATCATCTCTCTAAA 785
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 748 CATAAATGTGGTGAACAGTTCAATAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAA 807
Query 786 CACGCCGTAACAGAGCTTGTAGAAGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGC 845
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CATGCCGTAACGGAGCTTGTAGAAGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGC 867
Query 846 AGAACAAGCTGGTTAAAATCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTA 905
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AGAACAAGCTGGTTAAAGTCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTA 927
Query 906 CACAACATGCAAAAAACACTAGCTCGTTTTGAGGAATACAGAGAGACAGTAAAAATCAGA 965
||||||||||| || ||| ||||| | || |||||||||||||| ||||| |||||||||
Sbjct 928 CACAACATGCAGAAGACATTAGCTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGA 987
Query 966 GCAAGCAAACTTCAAAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGG 1025
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GCAAGCAAACTTCAGAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGG 1047
Query 1026 TTCCACGGAACCACAGTTGCTTGTGGTTTAGGTATAAACGGGTCAACGAGTCTTTGCACG 1085
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1048 TTCCACGGAACCACCGTGGCTTGTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACG 1107
Query 1086 GCGGAGAAATGTTGTGTTTGTCGGATTATACGGAACGGGTTCTCGTCGAAACGGGAGAAG 1145
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1108 GCGGAGAAATGTTGTGTCTGTCGGATTATACGAAACGGGTTCTCGTCGAAACGGGAGAAG 1167
Query 1146 AATAATGGGGTTGGTGTTTTCACGGCGTCGACTAGTGGAAGAGCGTTTGAGTCGATTTTG 1205
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1168 AATAATGGGGTTGGTGTTTTCACGGCGTCTACTAGTGGAAGAGCGTTCGAGTCGATTTTG 1227
Query 1206 GTTAATGGTGGAGATGAGAGTGGAGAGGTTGATCGGACGGTGAGGAAAGTGTTGATTGTG 1265
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1228 GTTAACGGTGGAGATGAGAGTGGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTG 1287
Query 1266 TGTAGGGTTATTGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGG 1325
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGTAGGGTTATCGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGG 1347
Query 1326 TTGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TTGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAG 1407
Query 1386 CTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGTGGTTATTTGCAAGCCCTaa 1445
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1408 CTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGTGGTCATTTGCAAGCCCTAA 1467
Query 1446 aaaaaaTTAGCAT-TTGGG 1463
|| | ||||||| |||||
Sbjct 1468 AACAT-TTAGCATGTTGGG 1485
> AT4G27240.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:13639963-13641792 FORWARD LENGTH=1645
Length=1645
Score = 616 bits (333), Expect = 3e-175
Identities = 669/825 (81%), Gaps = 48/825 (6%)
Strand=Plus/Plus
Query 631 gagaAGGGTTAGGGTTTCACACA-AACAGGAGAGTTTCATTGGAGATGAACAGAGAAAAC 689
||||||| |||||||||||| || | ||| |||| | || ||| | |||||| |
Sbjct 709 GAGAAGGATTAGGGTTTCAC-CAGAGCAGAAGAG----A---GA-ATG-ATAGAGAAGCC 758
Query 690 GTCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTCATAAATGTGGTGA-ACAGTTCAA 748
| |||||| ||| | ||||||||||||||||||| |||||||| || || | | || |
Sbjct 759 GCCATTAACGGA-G--ACAATTCCTCTGTTTCTTGCCATAAATGCGGCGAGA-AATTTAG 814
Query 749 TAAACTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACACGCCGTAACAGAGCTTGTAGA 808
||||| |||||||| |||||||||||||| | ||||||||||| || ||||| | ||
Sbjct 815 CAAACTCGAAGCTGCAGAAGCTCATCATCTAACCAAACACGCCGTGACTGAGCTAATGGA 874
Query 809 AGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAA-ATCAG 867
|||||| || || || | |||||||||||||||||||||||||||||||||||| | |||
Sbjct 875 AGGAGACTCGTCGAGGAGAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGA-CAG 933
Query 868 AGAACCAATGTGGAAGAATCGATAG-AGTTTTAAAAGTACACAACATGCAAAAAACACT- 925
|||| ||| | || ||||||||| | | |||| ||||||||||||||||||||||| ||
Sbjct 934 AGAATCAAGGAGGGAGAATCGATCGGA-TTTTGAAAGTACACAACATGCAAAAAAC-CTT 991
Query 926 AGCTCGTTTTGAGGAATACAGAGAGACAGTAAAAATCAGAGCAAGCAAACTT-CAAAAGA 984
||| | || || ||||||||||| ||||| || |||||||||||||| || |||||||
Sbjct 992 AGCGAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGCAAGCAAG-TTACAAAAGA 1050
Query 985 AGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGTTCCACGGAACCACAGTTG 1044
| ||||| |||||| |||| ||||| |||||||| || ||||| ||||| ||||| || |
Sbjct 1051 AACATCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTTTCACGGCACCACTGTGG 1110
Query 1045 CTTGTGGTTTAGGTATAAACGGGTCAACGAGTCTTTGCACGGCGGAGAAA-TGTTGTGTT 1103
|||| | ||| || ||||||||||| |||||||| || || |||| ||| ||||| |||
Sbjct 1111 CTTGCGCTTTGGGGATAAACGGGTCGACGAGTCTGTGTTCGTCGGA-AAAGTGTTGCGTT 1169
Query 1104 TGTCGGATTATACGGAACGGGTTCTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTT 1163
|||||||||||||| || ||||||||| |||||||||||| |||||| || |||| |||
Sbjct 1170 TGTCGGATTATACGAAATGGGTTCTCGGCGAAACGGGAGATGAATAACGGAATTGGGGTT 1229
Query 1164 TTCACGGCGTCGACTAGTG-GAAGAGCGTTTGAGTCGATTTTGGTTAATGGTGGAGATGA 1222
|| || |||||||| |||| || | ||||||||||| ||| || | | ||||||||
Sbjct 1230 TTTACTGCGTCGACGAGTGAGAGG-GCGTTTGAGTCTATTGTG---A-T--TGGAGATG- 1281
Query 1223 GAG-TGGAGAGGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATTGCCG 1281
| | ||| | | | ||||||| ||| || | |||||||||| | || |||||||
Sbjct 1282 GTGGTGGTG-G-T-GATCGGA-----AGGC--GT-T-GATTGTGTGTCGAGTGATTGCCG 1329
Query 1282 GAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGTTGATGAGTGGGTTTG 1341
| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1330 GGAGGGTTCATCGGCCGGTGGAGAATGTAGAGGAGATGGGTGGGTTGTTGAGTGGGTTTG 1389
Query 1342 ATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATC 1401
|||| |||||||| |||||||| ||||| |||||||| |||||||| |||||||| |||
Sbjct 1390 ATTCATTGGCTGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTCTATTTGCTCAATT 1449
Query 1402 CTAAAGCTTTGCTTCCTTGCTTTGTGGTTATTTGCAAGCCCTaaa 1446
|| ||||||||||||||| |||||| | || ||||| || ||||
Sbjct 1450 CTCGAGCTTTGCTTCCTTGTTTTGTGCTAATCTGCAAACCTTAAA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5