BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950127
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54770.1 | Symbols: THI1, TZ, THI4 | thiazole biosynthetic e... 1666 0.0
> AT5G54770.1 | Symbols: THI1, TZ, THI4 | thiazole biosynthetic
enzyme, chloroplast (ARA6) (THI1) (THI4) | chr5:22246592-22248332
FORWARD LENGTH=1533
Length=1533
Score = 1666 bits (902), Expect = 0.0
Identities = 1041/1106 (94%), Gaps = 17/1106 (2%)
Strand=Plus/Plus
Query 1 ACTCGAACCCTAAAG----A-AAAAATGGCTGCCATAGCTTCTACTCTCTCTCTTTCTTC 55
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 18 ACTCGAACCCTAAAGAAAAACAAAAATGGCTGCCATAGCTTCTACTCTCTCTCTTTCTTC 77
Query 56 AACCAAACCTCAAAGACTTTTCGATTCTTCCTTCCATGGCTCATCCATCTCCGCAGCTCC 115
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 78 AACCAAACCTCAGAGACTTTTCGATTCTTCCTTCCATGGCTCAGCCATCTCCGCAGCTCC 137
Query 116 TATCTCCATCGGACTCAAATCACGATCTGGAAGCGTAGTCTCTGTTCGCGCCACAACCGC 175
|||||||||||| |||||| |||||||| | |||| |||||||||||||||||
Sbjct 138 TATCTCCATCGGTCTCAAACCACGATCT-------T--TCTCCGTTCGCGCCACAACCGC 188
Query 176 TGGTTATGATTTGAACGCTTTCACTTTTGATCCGATCAAGGAATCGATCGTGTCTCGTGA 235
|||||| || |||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct 189 TGGTTACGACTTGAACGCTTTCACGTTCGACCCGATCAAGGAATCGATCGTGTCACGTGA 248
Query 236 GATGACTAGAAGGTACATGACTGACATGATCACTTACGCTGAGACTGATGTTGTCGTCGT 295
|||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 249 GATGACGAGAAGGTACATGACGGATATGATCACTTATGCTGAGACTGATGTCGTCGTCGT 308
Query 296 TGGTGCTGGATCTGCTGGTTTGTCTTG-TGCTTATGAGATTAGTAAGAACCCTAATGTTC 354
||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||
Sbjct 309 TGGTGCTGGATCTGCTGGTTTATC-TGCTGCTTATGAGATCAGTAAGAACCCTAATGTTC 367
Query 355 AAGTTGCTATTATTGAGCAATCTGTTAGTCCTGGTGGTGGTGCTTGGCTCGGTGGTCAGC 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AAGTTGCCATTATTGAGCAATCTGTTAGTCCTGGTGGTGGTGCTTGGCTCGGTGGTCAGC 427
Query 415 TTTTCTCCGCCATGATTGTTCGCAAACCAGCTCATTTGTTTTTTGATGAGATTGGTGTGG 474
|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 428 TTTTCTCCGCCATGATTGTTCGCAAACCAGCTCACTTGTTCCTTGACGAGATTGGTGTGG 487
Query 475 CTTACGATGAGCAAGACAACTACGTTGTGGTTAAGCACGCGGCTCTGTTTACATCGACCA 534
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 488 CTTACGATGAGCAAGACACCTACGTTGTGGTTAAGCACGCGGCTCTGTTCACATCAACCA 547
Query 535 TCATGAGCAAGCTTTTGGCTCGTCCTAACGTGAAGCTCTTCAACGCTGTGGCGGCTGAGG 594
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 548 TCATGAGCAAGCTTTTGGCTCGTCCTAATGTGAAGCTCTTCAACGCTGTGGCTGCTGAGG 607
Query 595 ATTTGATTGTGAAAGGAAACAGAGTTGGTGGTGTGGTGACTAACTGGGCTCTTGTGGCTC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ATTTGATTGTGAAAGGAAACAGAGTTGGTGGTGTGGTGACTAACTGGGCTCTTGTGGCTC 667
Query 655 AGAACCATGACACACAGTCGTGCATGGACCCCAATGTTATGGAGGCGAAGATTGTTGTTA 714
||||||| ||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 668 AGAACCACCACACACAATCGTGTATGGACCCTAATGTTATGGAAGCGAAGATTGTGGTTA 727
Query 715 GCTCGTGTGGTCATGATGGTCCCTTTGGAGCTACTGGTGTTAAGAGGTTGAAGAGTATTG 774
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 728 GCTCTTGTGGTCATGATGGTCCTTTTGGAGCTACTGGTGTTAAGAGGTTGAAGAGTATTG 787
Query 775 GGATGATTGATCATGTTCCTGGGATGAAGGCTTTGGACATGAACACTGCTGAAGACGCTA 834
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 788 GGATGATTGATCATGTTCCTGGGATGAAAGCTTTGGACATGAACACTGCTGAGGACGCTA 847
Query 835 TTGTGAGGTTGACCAGAGAGGTTGTTCCTGGTATGATTGTTACCGGTATGGAAGTTGCTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTGTGAGGTTGACCAGAGAGGTTGTTCCTGGTATGATTGTTACCGGTATGGAAGTTGCTG 907
Query 895 AGATCGATGGTGCACCGAGAATGGGACCGACATTTGGTGCTATGATGATATCGGGACAAA 954
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 908 AGATCGATGGTGCACCGAGAATGGGACCAACTTTTGGTGCTATGATGATATCGGGACAAA 967
Query 955 AGGCCGGACAACTTGCTCTTAAGGCTTTGGGGCTGCCAAATGCTATTGATGGAACTAACG 1014
|||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| ||
Sbjct 968 AGGCGGGACAACTTGCTCTTAAGGCTTTGGGGCTACCGAATGCTATTGACGGAACTCTCG 1027
Query 1015 TTGGAAACCTAAGCCCGGAGCTGGTCTTAGCCGCAGCCGATTCAGCTGAAACCGTAGATG 1074
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1028 TTGGAAACCTAAGCCCGGAGCTGGTCTTAGCCGCAGCAGATTCAGCTGAAACCGTAGATG 1087
Query 1075 CTTAAAATCAAAAGGTTTTAAC-TTA 1099
|||||||||||||||||||||| |||
Sbjct 1088 CTTAAAATCAAAAGGTTTTAACGTTA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5