BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950130
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54800.1 | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosp... 1897 0.0
> AT5G54800.1 | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosphate
translocator 1 | chr5:22261271-22263921 FORWARD LENGTH=1663
Length=1663
Score = 1897 bits (1027), Expect = 0.0
Identities = 1147/1205 (95%), Gaps = 8/1205 (1%)
Strand=Plus/Plus
Query 5 GAAAAAACCTC-CGGCG-ATGGTTTTGTCGGCGAAACAAACCCTCCCTACGAAGATCGGA 62
||||||||||| | | | |||||||| |||| ||| ||||| ||| || |||| ||||||
Sbjct 120 GAAAAAACCTCTCCGAGAATGGTTTTATCGGTGAAGCAAACACTCTCTCCGAAAATCGGA 179
Query 63 CTTTTCCGACGAAACCCTTCTTCCTCACTCCGAAGATCTCCGGTTTCTCTCTCGTTTCCA 122
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 180 CTTTTCCGACGAAACCCTTCATCCTCACTAGGAAGATCTCCTGTTTCTCTCTCGTTTCCA 239
Query 123 TCGACGGAGCTTCCAAAACGCACCGTTTTAGCCGTCTCGAAGCCGCTTCA--TCTC-TCT 179
||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||
Sbjct 240 TCGACGGAGCTTCCAAAACGCACCGTTTTAGCCGTGTCAAAGCCGCTTCATCTCTCTTCT 299
Query 180 TCTCTGAGCGCTAAGTCTCCGGTAGTGAGATGTGAAGCTTATGAAGCTGACCGATCAGAG 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCTGAGAGCTAAGTCTCCGGTAGTGAGATGTGAAGCTTATGAAGCTGACCGATCAGAG 359
Query 240 CCTCAGCCGATC---GATGATGCTGCGGCGGCGGAAACGAAATCAGAGGCGGCTAAGAAA 296
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTCATCCGATCGGTGATGATGCTGCGGCGGCGGAAACGAAATCAGAGGCGGCTAAGAAA 419
Query 297 TTGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTAC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTAC 479
Query 357 AACAAGAAGGTCTTGAACGCTTATCCTTACCCATGGCTTACGTCGACGCTTTCTCTTGCC 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 AACAAGAAGGTCTTGAACGCTTATCCTTACCCATGGCTTACCTCGACGCTTTCTCTTGCC 539
Query 417 GCTGGTTCGTTGATGATGCTAATCTCTTGGGCTGTTGGGATCGTTGAGACTCCCAAGACT 476
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTGGTTCGTTGATGATGCTTATCTCTTGGGCTGTTGGGATCGTTGAGACTCCCAAGACG 599
Query 477 GATTTCGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACATACAATTGGTCATGTG 536
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GATTTTGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACACACAATTGGTCATGTG 659
Query 537 GCTGCAACGGTGAGTATGTCAAAGGTTGCGGTTTCGTTCACTCACATCATCAAGAGTGGT 596
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 660 GCTGCAACGGTGAGTATGTCAAAGGTTGCTGTTTCTTTCACTCACATCATCAAGAGTGGT 719
Query 597 GAACCAGCGTTTAGCGTGCTTGTCTCGAGGTTCCTTTTGGGTGAAACCTTCCCTACTTCG 656
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GAACCTGCGTTTAGTGTGCTTGTCTCGAGGTTTATTTTGGGTGAAACCTTCCCTACTTCG 779
Query 657 GTTTACTTGTCCCTCATTCCAATCATCGGTGGTTGCGCTCTGTCTGCCCTTACCGAGCTT 716
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 GTTTACTTGTCTCTCATTCCAATCATTGGTGGTTGCGCTCTGTCTGCCCTTACCGAGCTT 839
Query 717 AACTTCAACATGATTGGTTTTATGGGAGCTATGATTTCGAACTTGGCGTTCGTCTTCCGT 776
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 840 AACTTCAACATGATTGGTTTCATGGGAGCTATGATTTCGAACTTGGCTTTCGTGTTCCGT 899
Query 777 AACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGAATGAACTACTACGCC 836
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 AACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGGATGAACTACTACGCC 959
Query 837 TGTCTCTCAATGTTGTCCCTATTGATCCTCACTCCCTTTGCGATTGCGGTTGAAGGACCT 896
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 960 TGTCTCTCAATGCTGTCCCTATTGATCCTCACTCCCTTTGCCATTGCTGTTGAAGGACCT 1019
Query 897 CAGATGTGGGTCGATGGCTGGCAAACGGCGCTCGCTACTGTTGGACCACAGTTTGTCTGG 956
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1020 CAGATGTGGGTCGATGGCTGGCAGACAGCGCTCGCTACTGTCGGACCACAGTTTGTCTGG 1079
Query 957 TGGGTGGCTGCGCAGAGTGTGTTCTATCACCTCTACAACCAAGTGTCTTACATGTCTTTA 1016
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGGTGGTTGCGCAGAGTGTGTTCTATCACCTCTACAACCAAGTGTCTTACATGTCTTTA 1139
Query 1017 GACCAAATCTCTCCCTTGACATTTAGTGTTGGTAACACCATGAAACGTATCTCTGTCATT 1076
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 GACCAAATCTCTCCCTTGACGTTTAGTGTTGGTAACACCATGAAACGTATCTCCGTCATT 1199
Query 1077 GTCTCATCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTTAACGCCCTTGGAGCCGCC 1136
||||| ||||||||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 1200 GTCTCCTCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTCAATGCTCTTGGAGCAGCC 1259
Query 1137 ATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCAAAGCTCTGATTCGGAAGACATAAG 1196
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1260 ATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCAAAGCTCTGATGCGAAAGACATAAG 1319
Query 1197 AGTGT 1201
|||||
Sbjct 1320 AGTGT 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5