BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950132
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-... 1343 0.0
> AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-21113621
REVERSE LENGTH=1440
Length=1440
Score = 1343 bits (727), Expect = 0.0
Identities = 1216/1448 (84%), Gaps = 49/1448 (3%)
Strand=Plus/Plus
Query 24 ATGAC-TTCTAAGAGAATAGTTTCAAGTATCCAATC-AGACAGATTATCGAATCTACCCG 81
||||| ||| |||||||||| ||||||||||||| | |||||||||||| |||||||| |
Sbjct 1 ATGACTTTC-AAGAGAATAGCTTCAAGTATCCAA-CAAGACAGATTATCCAATCTACCAG 58
Query 82 ATACACTTCTGATTATTATCATCTCTTCCTTGTCCTTCAAGGAATGTTTAAGTACCAGTG 141
|| ||||||||||| || ||||||| |||||| || ||||||||| |||| |||||||
Sbjct 59 ATGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTG 118
Query 142 TACTCTCTACGAGGTGGAGTTACCTCTGTCGAGAGACAAGAAACATTGCATTTAATGAAT 201
||||| ||| ||||||||| || || ||||| || |||||||||||| | ||||| |||
Sbjct 119 TACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAA 178
Query 202 CCGAGTATGTCGACCACTCTGTATCCGACAAAAAATCCAAAAGGCTTTCGTTTGTTGGC- 260
||||||| || ||||||| ||| |||||||||| |||||||||| ||||||||| | ||
Sbjct 179 CCGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCT-GCT 237
Query 261 TATATGAGTCAATGGATCTCTAGATATCATGGTCGTTACATCGAAAGCTTCGAGATTTGT 320
|||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||||||| |
Sbjct 238 TATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTAT 297
Query 321 TTCTCCCTTCCATTAGG-CTTTATGGCAGAGATCGAGTCTTTGATCGAATTTGCAGTGTC 379
|||||| ||||| | || ||| |||||| | ||||||| |||||||||| || || ||
Sbjct 298 TTCTCCATTCCA-TCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTC 356
Query 380 AAGACAAGTCAAGAACCTGGTTATTGATTTCAAAGACCCTTCTTGGACAATCAATAGCAG 439
|||||||||||||||||| ||| |||||||| ||||||||||||| || || |||| |
Sbjct 357 AAGACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTG 416
Query 440 TGCGTCTTGGTATGCCTAT-CTTGCTGTGAAATTGCCCGTATGCGTTTACAGTCTAACAA 498
|||||| |||||| |||| ||| |||| ||||||| ||||||||||| ||||||||||
Sbjct 417 TGCGTCGAGGTATGACTATGTTTG-TGTGCAATTGCCTGTATGCGTTTATAGTCTAACAA 475
Query 499 CCCTCGAATCACTGAAGATTTACGCGTGCGGGTTTGATCCTTCGAAATTCACAAACTCGG 558
|||| |||||||||||||||||| ||||||||||||| || ||||||||| ||||||||
Sbjct 476 CCCTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGA 535
Query 559 GATTGCCTAGAAAGCTCTCTATTGGTTGGATC-AACTTCACAGAGGCCGAGTCTTTGTTA 617
|||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||
Sbjct 536 GATTGCCTAGAAAGCTCTCTATTGGTTGGATCAAAC-TCACAGACGTTGAGTCTTTGTTA 594
Query 618 TCAAACTCTCCTACGCTCAAAAGTCTAAGTATTGATTACTGTTGGAGTGTTGATATCAAA 677
| ||||||||| || ||||| |||||||||||| ||||||||||| || |||| ||| |
Sbjct 595 TTAAACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGA 654
Query 678 AACATAGCCGGAGATATGAAAGAAGTTGTATTCGATAACTCCGACTTCTTCC-CTAAAAA 736
|||||||||||||||||||||||| ||||||| || | || ||||||| ||| || |
Sbjct 655 AACATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTC-TCCTCTTTCAT 713
Query 737 GGCTTGTTCCTTTGACCTGCCTAATGTAGAGATCTTCAAGTACTCAGGCTC-AGTTCTCT 795
|| ||||| ||||||||| ||||||||||||||||| || ||||| ||| | | |||| |
Sbjct 714 GGTTTGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGC-CAAATTCTGT 772
Query 796 CCTTCGATGTCAAGGGAATGAATAGGATAATAAAAGAAGTCTA-CTTGGACTTCTTCTGC 854
|||| ||||||||| ||||||||| || || ||||| || || |||||| ||| | |
Sbjct 773 CCTTTGATGTCAAGAGAATGAATATGAGCATCAAAGACGT-TATCTTGGATTTC-AC-G- 828
Query 855 GCAGAGGGCGAATACGATA-AACCGAATCGAAGAACAAAATTAGATGGAACAGATCTTTC 913
||||||||| || || | | | ||||| |||||| |||||||| ||| ||| ||| ||
Sbjct 829 GCAGAGGGCTTGTATGA-AGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTC 887
Query 914 TGGCTTCCTTAACAGTTTTCGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 973
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGCCTTCCTTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 947
Query 974 GTCTATCCAAGAATGTGAAGATCCGT-CAAGTTTACTTCGTCCTATGGATACAGAGCATT 1032
| |||||||||||||||||||||| | | | ||| |||||||| ||||| ||| | || |
Sbjct 948 GACTATCCAAGAATGTGAAGATCCATTCGA-TTTGCTTCGTCCGATGGAAACACAACACT 1006
Query 1033 TGGTGCTGAGAATGAGGATGCATGTCATGGAGTTTAAGGGGATTAAGCTCCTTCTTGATA 1092
|||||||||||| |||| ||||||||||||| |||||||| ||||||||||| || ||||
Sbjct 1007 TGGTGCTGAGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATA 1066
Query 1093 ATTGCCCGAACCTAGAAACACTAACTTTCGATATCATCCGTCGAAG-CAAGTTCTCGTAC 1151
||||||| ||||||||||| |||||||||||||| || ||||||| | |||||||||
Sbjct 1067 ATTGCCCTAACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTCTT-TTCTCGTAC 1125
Query 1152 ACTAAGTCATATTGTGGCATCTGTCCAAAAACATGTTGGCAAAATAGCCTTACCTACAAG 1211
| ||||||||||| |||| || ||||| | ||| |||| |||| | |||||| || |||
Sbjct 1126 AATAAGTCATATTATGGCGTCGGTCCACGATCATATTGGAAAAAAAACCTTACTTATAAG 1185
Query 1212 TCTCTTCCTAAGACACTTAAAGTGGTAGTGGTAAGGAA-TTATAGTGGTCACTTTAATGA 1270
|||||||||||||||||||| || || || || ||||| || | ||||| |||| ||
Sbjct 1186 TCTCTTCCTAAGACACTTAAGGTCGTGGTCGTGAGGAACTTC-ACTGGTCGCTTTGGCGA 1244
Query 1271 GCTAAATGTATTGAAGTTTTTGATTCAGTCCAGACGTGGGCAT-G-C--GGATGGG---- 1322
||||||||| |||||||||||||||||||| ||||||||| | | | ||| |||
Sbjct 1245 GCTAAATGTTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCA 1304
Query 1323 T---C-TATGTTGGAAAGAGTGGAGCTTTACATGCATAATAGTATGG-AGGAAAGTCAAA 1377
| | |||| ||||||||||||||||||||||| ||| |||||||| || |||||||||
Sbjct 1305 TGGGCCTATGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAG-AAAGTCAAA 1363
Query 1378 G-GATGTTGGCACATGA-GGAAGCCGA-GATGTTACAGAGTATTTCAGGGGCTGTACAGG 1434
|| ||||||| |||| ||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct 1364 AAGA-GTTGGCAGATGATGGA-GCC-ATGATGTTACAGAGTATTTCAGGGGATGTACAGG 1420
Query 1435 TTCTTGTA 1442
||||||||
Sbjct 1421 TTCTTGTA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5