BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950132 Length=1477 Score E Sequences producing significant alignments: (Bits) Value AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-... 1343 0.0 > AT1G56400.1 | Symbols: | F-box family protein | chr1:21111805-21113621 REVERSE LENGTH=1440 Length=1440 Score = 1343 bits (727), Expect = 0.0 Identities = 1216/1448 (84%), Gaps = 49/1448 (3%) Strand=Plus/Plus Query 24 ATGAC-TTCTAAGAGAATAGTTTCAAGTATCCAATC-AGACAGATTATCGAATCTACCCG 81 ||||| ||| |||||||||| ||||||||||||| | |||||||||||| |||||||| | Sbjct 1 ATGACTTTC-AAGAGAATAGCTTCAAGTATCCAA-CAAGACAGATTATCCAATCTACCAG 58 Query 82 ATACACTTCTGATTATTATCATCTCTTCCTTGTCCTTCAAGGAATGTTTAAGTACCAGTG 141 || ||||||||||| || ||||||| |||||| || ||||||||| |||| ||||||| Sbjct 59 ATGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTG 118 Query 142 TACTCTCTACGAGGTGGAGTTACCTCTGTCGAGAGACAAGAAACATTGCATTTAATGAAT 201 ||||| ||| ||||||||| || || ||||| || |||||||||||| | ||||| ||| Sbjct 119 TACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAA 178 Query 202 CCGAGTATGTCGACCACTCTGTATCCGACAAAAAATCCAAAAGGCTTTCGTTTGTTGGC- 260 ||||||| || ||||||| ||| |||||||||| |||||||||| ||||||||| | || Sbjct 179 CCGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCT-GCT 237 Query 261 TATATGAGTCAATGGATCTCTAGATATCATGGTCGTTACATCGAAAGCTTCGAGATTTGT 320 |||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||||||| | Sbjct 238 TATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTAT 297 Query 321 TTCTCCCTTCCATTAGG-CTTTATGGCAGAGATCGAGTCTTTGATCGAATTTGCAGTGTC 379 |||||| ||||| | || ||| |||||| | ||||||| |||||||||| || || || Sbjct 298 TTCTCCATTCCA-TCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTC 356 Query 380 AAGACAAGTCAAGAACCTGGTTATTGATTTCAAAGACCCTTCTTGGACAATCAATAGCAG 439 |||||||||||||||||| ||| |||||||| ||||||||||||| || || |||| | Sbjct 357 AAGACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTG 416 Query 440 TGCGTCTTGGTATGCCTAT-CTTGCTGTGAAATTGCCCGTATGCGTTTACAGTCTAACAA 498 |||||| |||||| |||| ||| |||| ||||||| ||||||||||| |||||||||| Sbjct 417 TGCGTCGAGGTATGACTATGTTTG-TGTGCAATTGCCTGTATGCGTTTATAGTCTAACAA 475 Query 499 CCCTCGAATCACTGAAGATTTACGCGTGCGGGTTTGATCCTTCGAAATTCACAAACTCGG 558 |||| |||||||||||||||||| ||||||||||||| || ||||||||| |||||||| Sbjct 476 CCCTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGA 535 Query 559 GATTGCCTAGAAAGCTCTCTATTGGTTGGATC-AACTTCACAGAGGCCGAGTCTTTGTTA 617 |||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||| Sbjct 536 GATTGCCTAGAAAGCTCTCTATTGGTTGGATCAAAC-TCACAGACGTTGAGTCTTTGTTA 594 Query 618 TCAAACTCTCCTACGCTCAAAAGTCTAAGTATTGATTACTGTTGGAGTGTTGATATCAAA 677 | ||||||||| || ||||| |||||||||||| ||||||||||| || |||| ||| | Sbjct 595 TTAAACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGA 654 Query 678 AACATAGCCGGAGATATGAAAGAAGTTGTATTCGATAACTCCGACTTCTTCC-CTAAAAA 736 |||||||||||||||||||||||| ||||||| || | || ||||||| ||| || | Sbjct 655 AACATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTC-TCCTCTTTCAT 713 Query 737 GGCTTGTTCCTTTGACCTGCCTAATGTAGAGATCTTCAAGTACTCAGGCTC-AGTTCTCT 795 || ||||| ||||||||| ||||||||||||||||| || ||||| ||| | | |||| | Sbjct 714 GGTTTGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGC-CAAATTCTGT 772 Query 796 CCTTCGATGTCAAGGGAATGAATAGGATAATAAAAGAAGTCTA-CTTGGACTTCTTCTGC 854 |||| ||||||||| ||||||||| || || ||||| || || |||||| ||| | | Sbjct 773 CCTTTGATGTCAAGAGAATGAATATGAGCATCAAAGACGT-TATCTTGGATTTC-AC-G- 828 Query 855 GCAGAGGGCGAATACGATA-AACCGAATCGAAGAACAAAATTAGATGGAACAGATCTTTC 913 ||||||||| || || | | | ||||| |||||| |||||||| ||| ||| ||| || Sbjct 829 GCAGAGGGCTTGTATGA-AGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTC 887 Query 914 TGGCTTCCTTAACAGTTTTCGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 973 || ||||||||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 888 TGCCTTCCTTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 947 Query 974 GTCTATCCAAGAATGTGAAGATCCGT-CAAGTTTACTTCGTCCTATGGATACAGAGCATT 1032 | |||||||||||||||||||||| | | | ||| |||||||| ||||| ||| | || | Sbjct 948 GACTATCCAAGAATGTGAAGATCCATTCGA-TTTGCTTCGTCCGATGGAAACACAACACT 1006 Query 1033 TGGTGCTGAGAATGAGGATGCATGTCATGGAGTTTAAGGGGATTAAGCTCCTTCTTGATA 1092 |||||||||||| |||| ||||||||||||| |||||||| ||||||||||| || |||| Sbjct 1007 TGGTGCTGAGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATA 1066 Query 1093 ATTGCCCGAACCTAGAAACACTAACTTTCGATATCATCCGTCGAAG-CAAGTTCTCGTAC 1151 ||||||| ||||||||||| |||||||||||||| || ||||||| | ||||||||| Sbjct 1067 ATTGCCCTAACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTCTT-TTCTCGTAC 1125 Query 1152 ACTAAGTCATATTGTGGCATCTGTCCAAAAACATGTTGGCAAAATAGCCTTACCTACAAG 1211 | ||||||||||| |||| || ||||| | ||| |||| |||| | |||||| || ||| Sbjct 1126 AATAAGTCATATTATGGCGTCGGTCCACGATCATATTGGAAAAAAAACCTTACTTATAAG 1185 Query 1212 TCTCTTCCTAAGACACTTAAAGTGGTAGTGGTAAGGAA-TTATAGTGGTCACTTTAATGA 1270 |||||||||||||||||||| || || || || ||||| || | ||||| |||| || Sbjct 1186 TCTCTTCCTAAGACACTTAAGGTCGTGGTCGTGAGGAACTTC-ACTGGTCGCTTTGGCGA 1244 Query 1271 GCTAAATGTATTGAAGTTTTTGATTCAGTCCAGACGTGGGCAT-G-C--GGATGGG---- 1322 ||||||||| |||||||||||||||||||| ||||||||| | | | ||| ||| Sbjct 1245 GCTAAATGTTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCA 1304 Query 1323 T---C-TATGTTGGAAAGAGTGGAGCTTTACATGCATAATAGTATGG-AGGAAAGTCAAA 1377 | | |||| ||||||||||||||||||||||| ||| |||||||| || ||||||||| Sbjct 1305 TGGGCCTATGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAG-AAAGTCAAA 1363 Query 1378 G-GATGTTGGCACATGA-GGAAGCCGA-GATGTTACAGAGTATTTCAGGGGCTGTACAGG 1434 || ||||||| |||| ||| ||| | ||||||||||||||||||||||| |||||||| Sbjct 1364 AAGA-GTTGGCAGATGATGGA-GCC-ATGATGTTACAGAGTATTTCAGGGGATGTACAGG 1420 Query 1435 TTCTTGTA 1442 |||||||| Sbjct 1421 TTCTTGTA 1428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72840990795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5