BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950136
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54850.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1007 0.0
> AT5G54850.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:22280583-22282352
REVERSE LENGTH=887
Length=887
Score = 1007 bits (545), Expect = 0.0
Identities = 601/629 (96%), Gaps = 0/629 (0%)
Strand=Plus/Plus
Query 18 ATAATGGTTCAGAAGCTTGAACTGATCAAAGGTGGGGGTGGATCGATAAAAATAGGAGCA 77
|||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||
Sbjct 104 ATAATGGTTCAGAAGCTTGAACAGATCAAAGGTGGAGGAGGATCCATAAAAATAGGAGCA 163
Query 78 ACAGGAACAGTCGCAACTCTAATGACTCGGGAGCTGGACTCCATGAAACAAACTTCACCT 137
|||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 164 ACAGGAACAGTCGCTACTCTAATGACACGAGAGCTAGACTCCATGAAACAAACTTCGCCT 223
Query 138 CAGACTCCCACAACGAGACCCATTAGAACAACGATCCCTGTCTCAGTAGACTGTGGCACA 197
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 224 AAGACTCCCACAACAAGACCCATTAGAACAACAATCCCTGTCTCAGTAGACTGTGGCACA 283
Query 198 TCTTCTTCAACTCCAAGAAGATCAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 257
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTTCTTCAACTCCAAGAAGAACAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 343
Query 258 AGCAATGTTAACAATGTTAGAACACCAAAGGGTCACAATGCCAAAACCACCCATCAGCTT 317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 344 AGCAATGTTAACAATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTT 403
Query 318 TCAATGCTTGGCTCTGATAATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCAT 377
||||||||||||||||||||||| |||||| | |||||||||||| | ||||||| ||||
Sbjct 404 TCAATGCTTGGCTCTGATAATGTTAGAACATCAAAGGGTCACAATGCCAAAAGCATTCAT 463
Query 378 CCGCTTTCAATGCTTGGCTCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAA 437
| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 464 CAGCTTTCAATGCTCGGCTCTGATAATGTTAGAACACCAAAGGGTCATCACAATACCAAA 523
Query 438 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 583
Query 498 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGATGTGAAATGCGGGAATCCAGATCGA 557
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 584 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGACGTGAAATGTGGGAATCCAGATCGA 643
Query 558 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAATGAG 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 644 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAACGAG 703
Query 618 AGCATCGGTTAAGAGCTCTCCAAAACTTT 646
||||| ||||||||||||| |||||||||
Sbjct 704 AGCATTGGTTAAGAGCTCTGCAAAACTTT 732
Score = 161 bits (87), Expect = 6e-39
Identities = 123/140 (88%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 336 AATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCATCCGCTTTCAATGCTTGGC 395
||||| |||||||| ||||| |||||| | |||| ||| |||| ||||||||||||||||
Sbjct 356 AATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTTTCAATGCTTGGC 415
Query 396 TCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAAAGCACTCATCAGCTTCCA 455
|||||||||||||||||| ||||||||||| | | | ||||||||| |||||||||| ||
Sbjct 416 TCTGATAATGTTAGAACATCAAAGGGTCAC-A-A-TGCCAAAAGCATTCATCAGCTTTCA 472
Query 456 ATGCTTGGCTCTGAAAATGT 475
||||| |||||||| |||||
Sbjct 473 ATGCTCGGCTCTGATAATGT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5