BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950136 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT5G54850.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1007 0.0 > AT5G54850.1 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22280583-22282352 REVERSE LENGTH=887 Length=887 Score = 1007 bits (545), Expect = 0.0 Identities = 601/629 (96%), Gaps = 0/629 (0%) Strand=Plus/Plus Query 18 ATAATGGTTCAGAAGCTTGAACTGATCAAAGGTGGGGGTGGATCGATAAAAATAGGAGCA 77 |||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| Sbjct 104 ATAATGGTTCAGAAGCTTGAACAGATCAAAGGTGGAGGAGGATCCATAAAAATAGGAGCA 163 Query 78 ACAGGAACAGTCGCAACTCTAATGACTCGGGAGCTGGACTCCATGAAACAAACTTCACCT 137 |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||| Sbjct 164 ACAGGAACAGTCGCTACTCTAATGACACGAGAGCTAGACTCCATGAAACAAACTTCGCCT 223 Query 138 CAGACTCCCACAACGAGACCCATTAGAACAACGATCCCTGTCTCAGTAGACTGTGGCACA 197 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 224 AAGACTCCCACAACAAGACCCATTAGAACAACAATCCCTGTCTCAGTAGACTGTGGCACA 283 Query 198 TCTTCTTCAACTCCAAGAAGATCAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 257 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 284 TCTTCTTCAACTCCAAGAAGAACAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 343 Query 258 AGCAATGTTAACAATGTTAGAACACCAAAGGGTCACAATGCCAAAACCACCCATCAGCTT 317 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 344 AGCAATGTTAACAATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTT 403 Query 318 TCAATGCTTGGCTCTGATAATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCAT 377 ||||||||||||||||||||||| |||||| | |||||||||||| | ||||||| |||| Sbjct 404 TCAATGCTTGGCTCTGATAATGTTAGAACATCAAAGGGTCACAATGCCAAAAGCATTCAT 463 Query 378 CCGCTTTCAATGCTTGGCTCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAA 437 | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 464 CAGCTTTCAATGCTCGGCTCTGATAATGTTAGAACACCAAAGGGTCATCACAATACCAAA 523 Query 438 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 583 Query 498 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGATGTGAAATGCGGGAATCCAGATCGA 557 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 584 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGACGTGAAATGTGGGAATCCAGATCGA 643 Query 558 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAATGAG 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 644 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAACGAG 703 Query 618 AGCATCGGTTAAGAGCTCTCCAAAACTTT 646 ||||| ||||||||||||| ||||||||| Sbjct 704 AGCATTGGTTAAGAGCTCTGCAAAACTTT 732 Score = 161 bits (87), Expect = 6e-39 Identities = 123/140 (88%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 336 AATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCATCCGCTTTCAATGCTTGGC 395 ||||| |||||||| ||||| |||||| | |||| ||| |||| |||||||||||||||| Sbjct 356 AATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTTTCAATGCTTGGC 415 Query 396 TCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAAAGCACTCATCAGCTTCCA 455 |||||||||||||||||| ||||||||||| | | | ||||||||| |||||||||| || Sbjct 416 TCTGATAATGTTAGAACATCAAAGGGTCAC-A-A-TGCCAAAAGCATTCATCAGCTTTCA 472 Query 456 ATGCTTGGCTCTGAAAATGT 475 ||||| |||||||| ||||| Sbjct 473 ATGCTCGGCTCTGATAATGT 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5