BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950137

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54855.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   797    0.0  


> AT5G54855.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr5:22282767-22284387 FORWARD LENGTH=712
Length=712

 Score =  797 bits (431),  Expect = 0.0
 Identities = 471/490 (96%), Gaps = 3/490 (1%)
 Strand=Plus/Plus

Query  1    GATTAAACCTTTTTCGCCTTCATGGATTCGAAGTTGAGGAATTTCGTGATGGGTCTGTTT  60
            ||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct  116  GATTAGACC-TTTTCGCATTCATGGATTCGAAGTTGAGAAATTTTGTGATGGGTCTGTTT  174

Query  61   GTGATGACTGCGATCTTGAA-AGGTTCTGGTGTCGACGCGTGGACTGGCGAGATTCGTGG  119
            |||||||||||||||||||| |  ||||||||| | |||||||||||| |||||||||||
Sbjct  175  GTGATGACTGCGATCTTGAATA-ATTCTGGTGTTGGCGCGTGGACTGGAGAGATTCGTGG  233

Query  120  TAGAGTTGTGTGTGATGTCTGTGCTGATTCTTCAATTGGACCAGAAGATCATGTTCTTGA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  234  TAGAGTTGTGTGTGATGTCTGTGCTGATTCTTCAATTGGACCAGAAGATCATGTTCTTGA  293

Query  180  AGGAGCTGAGGTTGCGGTTCTGTGCATAACCAAATCTGGAGAAGTTGTGAACTACCAAGC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  AGGAGCTGAGGTTGCGGTTCTGTGCATAACCAAATCTGGAGAAGTTGTGAACTACCAAGC  353

Query  240  TTTCACAAACTCAAAAGGTGTCTACACAGTTGCAGAGACAATGCCAGAGAGTGAACGTTG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  354  TTTCACAAACTCAAAAGGTGTCTACACAGTTGCAGAGACAATGCCAGAGAGCGAACGTTG  413

Query  300  GGACGCTTGCCTTGCAAGACCCATCAGCAGCTTCCACACACCTTGCAACCGCCTACACCA  359
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  414  GGACGCTTGCCTTGCAAGACCCATCAGCAGCTTCCACACACCTTGCAATCGCCTACACCA  473

Query  360  AGCCAATACCGGAATCAAATTCACTTATAACCGCCCTTCCGGTTTCTTTCATGCCGTGAA  419
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  AACCAATACCGGAATCAAATTCACTTATAACCGCCCTTCCGGTTTCTTTCATGCCGTGAA  533

Query  420  ACCATTTGTGTATCGACCCCAATATGCACCTTCTTATTGCTGATTCACAGACTCTTTGTT  479
            |||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||| 
Sbjct  534  ACCATTTGTGTATCGACCTCAATATGCACCTTCTTATTGCTGATTCAAAGACACCTTGTA  593

Query  480  AAAGTCCTTG  489
            ||||||||||
Sbjct  594  AAAGTCCTTG  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5