BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950140
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54880.1 | Symbols: | DTW domain-containing protein | chr5:... 1685 0.0
> AT5G54880.1 | Symbols: | DTW domain-containing protein | chr5:22291886-22293300
FORWARD LENGTH=1415
Length=1415
Score = 1685 bits (912), Expect = 0.0
Identities = 1148/1259 (91%), Gaps = 28/1259 (2%)
Strand=Plus/Plus
Query 3 GAAGC-TTTCGATTTCTAA-ATGTGCG----GT-ATGTCGTTATCAGGACAGATGATGGG 55
||||| ||| ||||||||| |||| | || |||| || ||||||||||||||||||
Sbjct 1 GAAGCTTTTGGATTTCTAATGTGTGTGAATCGTGATGTTGTCATCAGGACAGATGATGGG 60
Query 56 CCATGTCGTGGCCCGAACTCAGATGATCTTGTCTCGAAGTAACTTCGCCGATTGTATACG 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATGTCGTGGCCCGAACTCAGATGATCTTGTCTCGAAGTAACTTCGCCGATTGTATACG 120
Query 116 GTGTCAGGGGGTGAGAGTTTCCAAAACCCTAACAATGGGGACTAAGCGGCGACCCACTTG 175
||||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||
Sbjct 121 GTGTCAGGGCGTGAGAGTTTCAAAAACCCTAAAAATGGGGACAAAGCG---ACCCACTTG 177
Query 176 CCCTTCTTGCGATAAACCTAGCCAGCTCTGCCTCTGCAAGAAGATGCGATCTCCATGTTT 235
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 178 CCCTTCTTGCGATAAACCTAGCCAGCTCTGTCTCTGCAAGAAGATGAGATCTCCATGTTT 237
Query 236 CGATAATCAGGTTAGTGTTACTATTCTTCAGCACAGTCTCGAGAGAAAACACGCACTTAA 295
||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 238 TGATAATCAGGTGAGTATTACTATTCTTCAGCATAGTCTCGAGAGAAAACACGCGCTAAA 297
Query 296 TTCAACTCGAATCGCTAGATTAGGGCTTAAGAATGTTGGTGTGACTACTGTTTTCGATGT 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTCTACTCGAATCGCTAGATTAGGGCTTAAGAATGTTGGTGTGACTACTGTTTTCGATGT 357
Query 356 ACATGATGAGGCAGAGTTCGTAATCAGGGTCATTGGATCGGGTTGCAGCAAGATTGGCAC 415
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 358 TCATGATGAGGCAGAGTTCTTAATCAGGGTTATTGGATCGGGTTGCAGCAAGATTGACAC 417
Query 416 GAATCAGTCAGATTTTGATTATAGGCTAGAGAATGTTGCTTCTTTGGAGCTTGATGAGAG 475
|||||| | |||| ||| |||||| |||||||||||||||||||||| |||||||| ||
Sbjct 418 GAATCATTTGGATTCTGAGTATAGGGTAGAGAATGTTGCTTCTTTGGAACTTGATGATAG 477
Query 476 CTTTAAGTTAGGTATTAATGGAAATGTGGAGAACTTAGAATCTGAGAAGAATGTGGTGCT 535
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTTAAGTTAGGTAGTAGTGGCAATGTGGAGAACTTAGAATCTGAGAAGAATGTGGTGCT 537
Query 536 TGTTGATCATGGAAGCTTGAAAATTGCTGAAAGTTTGAAGCTTTCTCAACATTC-AGGTG 594
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||
Sbjct 538 TGTTGATCATGGAAGCTTGGAAATTGCTGAAAGTTTGAATCTTTCTCAACATTTGAG-TG 596
Query 595 AAATGTCTTGTCGGGATTTGCGGGTTACAGATAAGATAGGTTCTTGTGAAGAAATTAGAT 654
|||| |||| |||||||| |||||||| |||||||||||||||| ||||||| |||
Sbjct 597 AAATTTCTTATCGGGATTCGCGGGTTAGGGATAAGATAGGTTCTTATGAAGAA----GAT 652
Query 655 CAGAAGAGTTGATAAGAATCTGTATGAAGAAACAAGGTATCATCAGCAATGTCTCACACT 714
||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 653 --------TTGATAAAAATCTGTATGAAGAAACATGGTGTCATCAGCAATGTCTCACACT 704
Query 715 CTTTGATGCTTGAAACCAGTGTGGAGGATTCT-AGTTTTGATCATATATTGGGTTCTCCT 773
|||||||||||||||||| |||| ||| |||| ||||||||||||||||||| |||||||
Sbjct 705 CTTTGATGCTTGAAACCAATGTGAAGG-TTCTTAGTTTTGATCATATATTGGCTTCTCCT 763
Query 774 GCCGCGATGGATGTCTTGGCAAAAGGATTTGTGGTAACAAAGTTCTCAGAAGGGAAGCGA 833
|| || |||||||||||||||||||| ||| ||||||||||||| |||||||| |||| |
Sbjct 764 GCAGCCATGGATGTCTTGGCAAAAGGTTTTATGGTAACAAAGTTTTCAGAAGGAAAGCAA 823
Query 834 GAATTTGAACTTGAGGTTCCTCCTGGATCAGCACTATTGTTCCCGAGCGAAAAATCGGTG 893
|| ||||| || |||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 824 GAGTTTGAGCTCGAGGTTCCTCCTGGATCAGCTTTGTTGTTCCCGAGCGAAGAATCGGTA 883
Query 894 AAGATCAATGATCTTAAAGAGAAAGAAGAGTTGAAGGTAAGGAATCTGCTTGTTCTTGAT 953
||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 884 AAGATCAATTATCTTAAAGAGAAAGAAGAGTTAAAAGTAAGGAATCTGATTGTTCTTGAT 943
Query 954 GGGACATGGTCAAAGGCAAGAAGAATTTACCTTGAGAATCCATGGCTAAAGCTTTTACGT 1013
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 944 GGGACTTGGTCGAAGGCTAGAAGAATATACCTTGAGAATCCATGGCTAAAGCTTTTACGT 1003
Query 1014 TGCCATGTGAAGCTAGAAATGGAAGGTACAAGTATATACAAAGAAGTTCGAAGGCAGCCA 1073
|||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||
Sbjct 1004 TGCCATGTGAAGCTAGAAATAGAAGGTACAAGTTTATACAAAGAAGTACGACGGCAGCCA 1063
Query 1074 AGAGCGGGATGTTTATCGACAATAGAGAGTATTGTATACACGATGAAGGAGATCGGTGAA 1133
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 1064 AGAGCGGGATGTTTATCCACGATAGAGAGTATTGTATACGCGATGAAGGAGATCGGTGAA 1123
Query 1134 GATCCCGAAGGTTTAGATAATATGTTGAATGTCTTTGAATCCATGGTTGAAGATCAAAGA 1193
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1124 GATCCTGAAGGTTTAGATAATATGTTGAATGTTTTTGAATCCATGGTTGAAGATCAACGA 1183
Query 1194 AGATGTAAAGATGAGAACTTTGAA-AAGATTATCTGAAAGACAAAATGACTTTGCTGTT 1251
||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||
Sbjct 1184 AGATGTAAAGATGAGAACTTT-AACAAGATTATCTGAAAGACAAAATTACTCTGCTGTT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5