BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950145
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54930.1 | Symbols: | AT hook motif-containing protein | ch... 1334 0.0
> AT5G54930.1 | Symbols: | AT hook motif-containing protein |
chr5:22305734-22307564 REVERSE LENGTH=1154
Length=1154
Score = 1334 bits (722), Expect = 0.0
Identities = 840/898 (94%), Gaps = 3/898 (0%)
Strand=Plus/Plus
Query 1 CAATATCAAATCTTCAAGAAATGGAGAAGGAAGGACATGAGGAGAACAACCACACTGTCT 60
||||||| | ||| |||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 112 CAATATC-GAGCTTGGAGAAATGGAGAAGGAAAGCCATGAGGAGAACAACCACACTATCT 170
Query 61 CAGGAGATTTAATGGCGAAACGAAAACGAGGTCGTCCGAAGAAACAATTGAAGCTAGAAA 120
|||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 171 CAGGTGATTTAACGGCAAAACGGAAACGAGGTCGTCCGAGGAAACAATTGAAGCTGGAAT 230
Query 121 CGAATGAGCAGTCTCTTGGTCATTCTCCAAGGTTTAGCAGGAGTCAGCAGCAGTCTCGCC 180
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 231 CGAATGAGCACTCTCTTGGTCATTCTCCAAGTTTTAGCAGGAGTCAGCAGCAGTCTCGCC 290
Query 181 ATAGGGATGGGGATGAAGCTATGGTTGGACAACCGATTAGTGGCGTGATTGAGGCAACAT 240
| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 291 AGAGGAATGACGATGAAGCTATGGTTGGACAGCCGATTAGTGGTGTGATTGAGGCGACAT 350
Query 241 TTGAAGCTGGGTTCTTGCTTTCGGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 300
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 351 TTGAAGCCGGGTTCTTGCTTTCTGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 410
Query 301 TGGTGTTCAAGCCCGGTCACTGCGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 360
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGTCTTCAAGCCTGGTCACTGTGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 470
Query 361 TTCCAATGATAAGAAGAAACAGTGATGTGAAGCATCATGACGGCTCAGCTAAACGAGGTC 420
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct 471 TTCCAATGATAAGAAGAAACAGTGATGTGATGCATCATGATGGCTCAGCTAAAAGAGGTC 530
Query 421 GGAAATCTAGGTTCCGTGAGAAGCGTGGTAGTGGTGTTAGAACCAGAGCATTGGTTCCTG 480
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 GGAAATCTAGATTCCGGGAGAAGCGTGGTAGTGGTGTTAGAAGCAGAGCATTGGTTCCTG 590
Query 481 TCCCGATTGAGCCGGCTCATCCGACAATACCAAAGAATCTTGTGGTTCCCGTCGTGCTTC 540
|||||||| ||||||||||||| ||||||||||| |||||| | |||||||| |||||||
Sbjct 591 TCCCGATTCAGCCGGCTCATCCAACAATACCAAATAATCTTATTGTTCCCGTTGTGCTTC 650
Query 541 AGCCAT-CCCATCTACAGAATGGTGGTGGGCGGGTCCCGATTTACCATAGTCCCATGCAG 599
|||| | |||||||| |||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 651 AGCC-TGCCCATCTAGAGAATGGTGGTGAGCGGGTCCCGATCGACCACAGTCCCATGCAG 709
Query 600 ACCGAGACAGGGTCTCAAGTGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTGCTC 659
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 710 ACCGAGACAGGGTCTCAAGCGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTTCTC 769
Query 660 ACACAGGTGATGAATAAAGGTCAAGTCCATCACACAGCACAGTCCATTGAACCCGAGTCA 719
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 770 ACACAGGTGATGAATAAAGGTCAAGTCCAGCACACAACACAGTCCGTTGAACCCGAGTCA 829
Query 720 GATGAGCAAGCTCTGTCTATTGAGCCATTGCAGGCGATACACCCGATCCATCCAGTACAT 779
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 830 GATGAGCAAGCTCTGTCCATTGAGCCATTGCAGGCGATACACCCAATCCATCCAGTACAT 889
Query 780 ATGCCGAAACCCATGACGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 839
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATGCTGAAACCCATGCCGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 949
Query 840 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGATTATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 950 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGACTATT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5