BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950145 Length=901 Score E Sequences producing significant alignments: (Bits) Value AT5G54930.1 | Symbols: | AT hook motif-containing protein | ch... 1334 0.0 > AT5G54930.1 | Symbols: | AT hook motif-containing protein | chr5:22305734-22307564 REVERSE LENGTH=1154 Length=1154 Score = 1334 bits (722), Expect = 0.0 Identities = 840/898 (94%), Gaps = 3/898 (0%) Strand=Plus/Plus Query 1 CAATATCAAATCTTCAAGAAATGGAGAAGGAAGGACATGAGGAGAACAACCACACTGTCT 60 ||||||| | ||| |||||||||||||||| | ||||||||||||||||||||| ||| Sbjct 112 CAATATC-GAGCTTGGAGAAATGGAGAAGGAAAGCCATGAGGAGAACAACCACACTATCT 170 Query 61 CAGGAGATTTAATGGCGAAACGAAAACGAGGTCGTCCGAAGAAACAATTGAAGCTAGAAA 120 |||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 171 CAGGTGATTTAACGGCAAAACGGAAACGAGGTCGTCCGAGGAAACAATTGAAGCTGGAAT 230 Query 121 CGAATGAGCAGTCTCTTGGTCATTCTCCAAGGTTTAGCAGGAGTCAGCAGCAGTCTCGCC 180 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 231 CGAATGAGCACTCTCTTGGTCATTCTCCAAGTTTTAGCAGGAGTCAGCAGCAGTCTCGCC 290 Query 181 ATAGGGATGGGGATGAAGCTATGGTTGGACAACCGATTAGTGGCGTGATTGAGGCAACAT 240 | ||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 291 AGAGGAATGACGATGAAGCTATGGTTGGACAGCCGATTAGTGGTGTGATTGAGGCGACAT 350 Query 241 TTGAAGCTGGGTTCTTGCTTTCGGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 300 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 351 TTGAAGCCGGGTTCTTGCTTTCTGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 410 Query 301 TGGTGTTCAAGCCCGGTCACTGCGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 360 |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 411 TGGTCTTCAAGCCTGGTCACTGTGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 470 Query 361 TTCCAATGATAAGAAGAAACAGTGATGTGAAGCATCATGACGGCTCAGCTAAACGAGGTC 420 |||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| Sbjct 471 TTCCAATGATAAGAAGAAACAGTGATGTGATGCATCATGATGGCTCAGCTAAAAGAGGTC 530 Query 421 GGAAATCTAGGTTCCGTGAGAAGCGTGGTAGTGGTGTTAGAACCAGAGCATTGGTTCCTG 480 |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 531 GGAAATCTAGATTCCGGGAGAAGCGTGGTAGTGGTGTTAGAAGCAGAGCATTGGTTCCTG 590 Query 481 TCCCGATTGAGCCGGCTCATCCGACAATACCAAAGAATCTTGTGGTTCCCGTCGTGCTTC 540 |||||||| ||||||||||||| ||||||||||| |||||| | |||||||| ||||||| Sbjct 591 TCCCGATTCAGCCGGCTCATCCAACAATACCAAATAATCTTATTGTTCCCGTTGTGCTTC 650 Query 541 AGCCAT-CCCATCTACAGAATGGTGGTGGGCGGGTCCCGATTTACCATAGTCCCATGCAG 599 |||| | |||||||| |||||||||||| |||||||||||| |||| |||||||||||| Sbjct 651 AGCC-TGCCCATCTAGAGAATGGTGGTGAGCGGGTCCCGATCGACCACAGTCCCATGCAG 709 Query 600 ACCGAGACAGGGTCTCAAGTGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTGCTC 659 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 710 ACCGAGACAGGGTCTCAAGCGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTTCTC 769 Query 660 ACACAGGTGATGAATAAAGGTCAAGTCCATCACACAGCACAGTCCATTGAACCCGAGTCA 719 ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| Sbjct 770 ACACAGGTGATGAATAAAGGTCAAGTCCAGCACACAACACAGTCCGTTGAACCCGAGTCA 829 Query 720 GATGAGCAAGCTCTGTCTATTGAGCCATTGCAGGCGATACACCCGATCCATCCAGTACAT 779 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 830 GATGAGCAAGCTCTGTCCATTGAGCCATTGCAGGCGATACACCCAATCCATCCAGTACAT 889 Query 780 ATGCCGAAACCCATGACGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 839 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 ATGCTGAAACCCATGCCGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 949 Query 840 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGATTATT 897 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 950 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGACTATT 1007 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44005112772 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5