BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950146

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54940.1 | Symbols:  | Translation initiation factor SUI1 fa...   627    3e-179


> AT5G54940.1 | Symbols:  | Translation initiation factor SUI1 
family protein | chr5:22308271-22309408 REVERSE LENGTH=658
Length=658

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 367/380 (97%), Gaps = 4/380 (1%)
 Strand=Plus/Plus

Query  4    AAAGTAACCAAGTTTACATGGTTGAGCTAGACATTCAGATTCCATCAGCATTCGATCCTT  63
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  154  AAAGTAACCAAGTTTACATGGTTGAGCTAGACATTCAGATTCCATCAGCATACGATCCAT  213

Query  64   TTGCAGAAGCTAAAGATTCAGATGCACCTGGAGCTAAAGAGAACATTCACATCCGAATCC  123
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  214  TTGCAGAAGCTAAAGATTCAGATGCACCAGGAGCTAAAGAGAACATTCACATTCGAATCC  273

Query  124  AGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGCCTTAAGAAAGAGTATAGCT  183
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  274  AGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGGCTTAAGAAAGAGTACAGCT  333

Query  184  ACGAGAGGATTCTCAAGGATTTGAAGAAAGACTTT-TGCTGCAACGGTAACGTTGTGCAG  242
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  334  ACGAGAGGATTCTCAAGGATTTGAAGAAAGA-TTTCTGCTGCAACGGTAACGTTGTGCAG  392

Query  243  GACAAAGAGCTAGGCAAGATCATTCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAG  302
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  393  GACAAAGAACTAGGCAAGATCATCCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAG  452

Query  303  TTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGATCAAGATCCACGGTTTCTAAA-T  361
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  453  TTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGATCAAGATCCACGGTTTCTAAACT  512

Query  362  CGAATCCGAATTGGATCGTT  381
             ||| |||||||||||||||
Sbjct  513  -GAACCCGAATTGGATCGTT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5