BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950147

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26970.1 | Symbols: ACO2 | aconitase 2 | chr4:13542918-13548...   436    1e-121
  AT5G54950.1 | Symbols:  | Aconitase family protein | chr5:22309...   267    2e-70 


> AT4G26970.1 | Symbols: ACO2 | aconitase 2 | chr4:13542918-13548629 
FORWARD LENGTH=3349
Length=3349

 Score =  436 bits (236),  Expect = 1e-121
 Identities = 383/454 (84%), Gaps = 10/454 (2%)
 Strand=Plus/Plus

Query  162   TTTGCCAGTA-CGTGTCTTGTAAACAAGCTCTT-AAATGGAGAAGTTGGCCCCAAGACAG  219
             ||||||| || |  || |||| ||||||||||| ||| ||||||||||||||||| || |
Sbjct  2632  TTTGCCAATATC-CGTATTGTTAACAAGCTCTTGAAA-GGAGAAGTTGGCCCCAACACTG  2689

Query  220   TTCACATTCCTACAGGAGAGAAAATTTGCATTTAT-GATGCAGCAAGTAGATACAAGACC  278
             |||||||||| || ||||||||  || || ||| | ||||||||||||| ||||||||||
Sbjct  2690  TTCACATTCCGACTGGAGAGAAGCTTAGCGTTT-TCGATGCAGCAAGTAAATACAAGACC  2748

Query  279   GCTGGACAGGATACGATCATACTAGCTGGTGCTGAGTATGGAAGTGGTAGCTCTCGGGAT  338
             |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  2749  GCTGAACAGGATACGATCATCCTGGCTGGTGCTGAGTATGGAAGTGGTAGCTCTCGGGAT  2808

Query  339   TGGGCTGCAAAGGGTCCAATGCTTCTGGGAGTGAAAGCTATCATTGCCAAGAGCTTTAAT  398
             |||||||||||||||||  ||||| |||||||||||||| | ||||||||||||||| | 
Sbjct  2809  TGGGCTGCAAAGGGTCCCTTGCTTTTGGGAGTGAAAGCTGTAATTGCCAAGAGCTTTGAG  2868

Query  399   AGAGTCCACCGCAGCAACTTGGCTAGTATAAGGATTGTTCCTCTGTGTTTCAAGTCCGGT  458
             ||| |||| ||||||||| ||||| ||||  ||||  ||||||||||||||||| | || 
Sbjct  2869  AGAATCCATCGCAGCAACCTGGCTGGTATGGGGATCATTCCTCTGTGTTTCAAGGCTGGG  2928

Query  459   GAAGATGCAGAAACCCTTGGACTAACTGGCCATGAACGCTACACAATCCACCTTCCTAGC  518
             || || || |||||||||||||| ||||| ||||||||||||||| |||||||||||| |
Sbjct  2929  GAGGACGCGGAAACCCTTGGACTCACTGGTCATGAACGCTACACAGTCCACCTTCCTA-C  2987

Query  519   GAT-GTCAATGAGATAAAACCAGGCCAGGACATAACTGTGACCACTGACACTG-CTAATT  576
              |  || | ||| || | ||| || || ||| | ||||| |||||||||| || | ||| 
Sbjct  2988  AAAAGTTAGTGACATTAGACCCGGTCAAGACGTCACTGTAACCACTGACAGTGGCAAATC  3047

Query  577   CTTTTGTCTGCACTTTGCGGTTAGACACAGAGGT  610
             |||| ||||||||  |||| || || ||||||||
Sbjct  3048  CTTT-GTCTGCACCCTGCGTTTTGATACAGAGGT  3080


> AT5G54950.1 | Symbols:  | Aconitase family protein | chr5:22309832-22310242 
REVERSE LENGTH=225
Length=225

 Score =  267 bits (144),  Expect = 2e-70
 Identities = 156/162 (96%), Gaps = 0/162 (0%)
 Strand=Plus/Plus

Query  447  TTCAAGTCCGGTGAAGATGCAGAAACCCTTGGACTAACTGGCCATGAACGCTACACAATC  506
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  7    TTCAAGTCCGGTGAAGATGCAGAAACCCTTGGACTAACTGGCCATGAACTCTACACAATC  66

Query  507  CACCTTCCTAGCGATGTCAATGAGATAAAACCAGGCCAGGACATAACTGTGACCACTGAC  566
            |||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  67   CACCTTCCTAGTAATATCAATGAGATAAAACCAGGCCAGGACATAACTGTGACTACTGAC  126

Query  567  ACTGCTAATTCTTTTGTCTGCACTTTGCGGTTAGACACAGAG  608
            |||||||| |||||||||||||||||||||||||||||||||
Sbjct  127  ACTGCTAAATCTTTTGTCTGCACTTTGCGGTTAGACACAGAG  168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37675610250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5