BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950163 Length=532 Score E Sequences producing significant alignments: (Bits) Value AT5G55110.1 | Symbols: | Stigma-specific Stig1 family protein ... 782 0.0 AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated ... 89.8 2e-17 > AT5G55110.1 | Symbols: | Stigma-specific Stig1 family protein | chr5:22367870-22368361 FORWARD LENGTH=492 Length=492 Score = 782 bits (423), Expect = 0.0 Identities = 469/492 (95%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 21 ATGGCCCAATTCATGAAGTTACTCGTGACAATTGCATTAACAACCGTAGTCATAATCGCC 80 |||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||| Sbjct 1 ATGGCCCATTTCATGAAGCTACTCGTGACAATTGCATTAACAACCGTGGTCACAATCGCC 60 Query 81 ATCATCACCACCAAAACCACCACCAAGACCGCAACCTTTGCTCTCGAAGACCCTTTCAAG 140 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 ATCGTCACCACCAAAACCACCACCAAGACCGCAACATTTGCTCTCGAAGACCCTTTCAAG 120 Query 141 GACCTTACGCCACCAGGAACGATTAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 200 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GACCTTACACCACCAGGAACGATCAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 180 Query 201 GACCAGGGTAAAGGACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 260 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GACAAGGGTAAAGAACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 240 Query 261 AATGAAATCTGTAGCAGCAGCGATTACAGCACCGGAGCAAACGCTACAATGGCTTGTTGT 320 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 AATGAAATCTGTAGCAGCAGCGATTACAGCACAGGAGCAAACGCTACAATGGCTTGTTGC 300 Query 321 AACAACAAGTGTATGGATTTATCTTCCGACGACAAAAACTGCGGTGCGTGTAAAAACAAA 380 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 301 AACAACAAGTGTATGGATTTATCAACCGACGACAAAAACTGCGGTTTATGTAAGAACAAA 360 Query 381 TGCAAGTTCGGACAAACGTGTTGTCGTGGTCAGTGCGTATACGTTGCTTACGATAAACGT 440 ||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 361 TGCAAGTTCGGGCAAACGTGTTGTCGTGGTCAGTGCGTTTACGTGGCCTACGATAAACGC 420 Query 441 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 480 Query 501 AACTACGCGTGA 512 |||||||||||| Sbjct 481 AACTACGCGTGA 492 > AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated membrane protein 723 | chr2:14041038-14043358 REVERSE LENGTH=1379 Length=1379 Score = 89.8 bits (48), Expect = 2e-17 Identities = 68/77 (88%), Gaps = 4/77 (5%) Strand=Plus/Plus Query 343 CTTCC-GACGACAAAAACTGCGGTGC-G--TGTAAAAACAAATGCAAGTTCGGACAAACG 398 ||||| | |||| ||||||| ||||| | ||||| |||||||||||||||||||||||| Sbjct 241 CTTCCTGTCGACTAAAACTGTGGTGCAGCATGTAAGAACAAATGCAAGTTCGGACAAACG 300 Query 399 TGTTGTCGTGGTCAGTG 415 ||||||| ||||||||| Sbjct 301 TGTTGTCTTGGTCAGTG 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25468712529 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5