BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950163

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55110.1 | Symbols:  | Stigma-specific Stig1 family protein ...   782    0.0  
  AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated ...  89.8    2e-17


> AT5G55110.1 | Symbols:  | Stigma-specific Stig1 family protein 
| chr5:22367870-22368361 FORWARD LENGTH=492
Length=492

 Score =  782 bits (423),  Expect = 0.0
 Identities = 469/492 (95%), Gaps = 0/492 (0%)
 Strand=Plus/Plus

Query  21   ATGGCCCAATTCATGAAGTTACTCGTGACAATTGCATTAACAACCGTAGTCATAATCGCC  80
            |||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct  1    ATGGCCCATTTCATGAAGCTACTCGTGACAATTGCATTAACAACCGTGGTCACAATCGCC  60

Query  81   ATCATCACCACCAAAACCACCACCAAGACCGCAACCTTTGCTCTCGAAGACCCTTTCAAG  140
            ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   ATCGTCACCACCAAAACCACCACCAAGACCGCAACATTTGCTCTCGAAGACCCTTTCAAG  120

Query  141  GACCTTACGCCACCAGGAACGATTAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC  200
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  GACCTTACACCACCAGGAACGATCAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC  180

Query  201  GACCAGGGTAAAGGACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC  260
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GACAAGGGTAAAGAACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC  240

Query  261  AATGAAATCTGTAGCAGCAGCGATTACAGCACCGGAGCAAACGCTACAATGGCTTGTTGT  320
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  241  AATGAAATCTGTAGCAGCAGCGATTACAGCACAGGAGCAAACGCTACAATGGCTTGTTGC  300

Query  321  AACAACAAGTGTATGGATTTATCTTCCGACGACAAAAACTGCGGTGCGTGTAAAAACAAA  380
            |||||||||||||||||||||||  ||||||||||||||||||||   ||||| ||||||
Sbjct  301  AACAACAAGTGTATGGATTTATCAACCGACGACAAAAACTGCGGTTTATGTAAGAACAAA  360

Query  381  TGCAAGTTCGGACAAACGTGTTGTCGTGGTCAGTGCGTATACGTTGCTTACGATAAACGT  440
            ||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| 
Sbjct  361  TGCAAGTTCGGGCAAACGTGTTGTCGTGGTCAGTGCGTTTACGTGGCCTACGATAAACGC  420

Query  441  CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT  500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT  480

Query  501  AACTACGCGTGA  512
            ||||||||||||
Sbjct  481  AACTACGCGTGA  492


> AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated 
membrane protein 723 | chr2:14041038-14043358 REVERSE LENGTH=1379
Length=1379

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 68/77 (88%), Gaps = 4/77 (5%)
 Strand=Plus/Plus

Query  343  CTTCC-GACGACAAAAACTGCGGTGC-G--TGTAAAAACAAATGCAAGTTCGGACAAACG  398
            ||||| | |||| ||||||| ||||| |  ||||| ||||||||||||||||||||||||
Sbjct  241  CTTCCTGTCGACTAAAACTGTGGTGCAGCATGTAAGAACAAATGCAAGTTCGGACAAACG  300

Query  399  TGTTGTCGTGGTCAGTG  415
            ||||||| |||||||||
Sbjct  301  TGTTGTCTTGGTCAGTG  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25468712529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5