BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950164
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltra... 2019 0.0
AT4G26850.1 | Symbols: VTC2 | mannose-1-phosphate guanylyltrans... 785 0.0
> AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltransferase
(GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases
| chr5:22369095-22371867 FORWARD LENGTH=1874
Length=1874
Score = 2019 bits (1093), Expect = 0.0
Identities = 1249/1324 (94%), Gaps = 12/1324 (1%)
Strand=Plus/Plus
Query 10 ATTTGTGAGTAATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTGTCGAATTATCAGA 69
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 410 ATTTGTGAGCAATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATCGAATTATCAAA 469
Query 70 AAGATGAAACGGTGGAAGAAGGTGGATGTGGTCGGAATTGCT-TGAGCAAGTGTTGTATC 128
||||||| || || |||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 470 AAGATGAGACAGTTGAAGAAGGTGGATGTGGTCGGAATTG-TCTGAGCAAGTGTTGCATC 528
Query 129 AATGGGGCAAGACTTCCTTTATATACTTGCAAGAATCTTGATACATTCGTCGGAGAGAAG 188
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 529 AATGGGGCAAGACTTCCTTTATATACCTGCAAGAATCTTGATAAATCCGTCGGAGAGAAC 588
Query 189 TTAGAATCTCCGGTGATGTTCCTCGAAT-CTCTAGTTCTTGGAGAGTGGGAAGATCGTTT 247
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 589 ACAGAATCTCCGGTGACGTTCCTCGAATCCT-TAGTTATTGGAGAGTGGGAAGATCGTTT 647
Query 248 CCAAAGAGGACTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAA 307
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCAAAGAGGTCTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAA 707
Query 308 GTACGGTTTCATTGCGCAGCTGAATGAAGGTCGTCATCTCAAGAAGAGACCAACCGAGTT 367
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 708 GTACGGTTTCATTGCGCAGCTGAATGAAGGTCGGCATCTCAAGAAGAGACCAACCGAGTT 767
Query 368 CTGTGTTGACAAAGTTCTTCAACCATTTGATGGAAACAAGTTCAATTTCACTAAAGTTGG 427
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 768 CCGTGTTGACAAAGTTCTTCAACCATTTGATGGAAACAAATTCAATTTCACTAAAGTTGG 827
Query 428 TCAAGAAGAGTTGCTTTTCCAGTTTGAAGCTAGCAATAACGACGATGATAGTAAAATCCA 487
||||||||||||||||||||||||| ||||||||| ||| || ||||||||| |||| ||
Sbjct 828 TCAAGAAGAGTTGCTTTTCCAGTTTAAAGCTAGCACTAATGATGATGATAGTGAAATTCA 887
Query 488 GTTCTTGCCGAGTATCCCTCTAGACGCGGATAATTCTCCAAGCGTCGTTGCAATCAATGT 547
||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 888 GTTCTTGGCGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATGT 947
Query 548 GAGTCCGATTGAGTATGGACATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTGCCTCA 607
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 948 GAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCA 1007
Query 608 AAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGCTAATCC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1008 AAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCC 1067
Query 668 GTATTTCCGACTTGGATACAACAGTTTAGGAGCTTTTGCTACCATCAACCATCTTCACTT 727
||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||
Sbjct 1068 GTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTT 1127
Query 728 TCAGGCTTACTATTTGGCAATGCAATTCCCGATTGAGAAAGCTTCTTCCTTGAAGATCAC 787
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1128 TCAGGCTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAGATCAC 1187
Query 788 TACCACTAATAACGGCGTCAAAATCTCAAAACTCTTGAATTACCCTGTGAGGGGTCTTCT 847
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1188 TACCACCAATAATGGCGTCAAAATCTCTAAACTCTTGAATTACCCTGTGAGAGGTCTTCT 1247
Query 848 ATTTGAAGGTGGAAACTCCATTAAAGATCTCTCTGATACTGTATCAGATGCATCCGTTTG 907
| |||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1248 AGTTGAAGGTGGAAACACCATTAAAGATCTCGCAGATACTGTATCAGACGCATCCGTTTG 1307
Query 908 TCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGATTCTGGAAAACAAATCTT 967
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 1308 TCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTT 1367
Query 968 CCTTCTCCCTCAGTGTTACGCAGAGAAACAAGCTTTAGGAGAAGTTAGCTCAAAGCTATT 1027
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1368 CCTTCTCCCTCAGTGTTACGCAGAGAAACAGGCTTTAGGAGAAGTTAGCTCAACGCTATT 1427
Query 1028 GGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAA 1487
Query 1088 AGAAGACTACGAAGGAGCTTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCGTT 1147
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1488 AGAAGACTATGAAGGAGCGTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCTTT 1547
Query 1148 ATCAGAGGAGAGATTCAAAGAAGTTAACACTATGATATTTGAGGCCATCGGATTTAGTAG 1207
||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1548 ATCAGAGGAGAGATTCAGAGAAGTTAACACTATGATATTTGATGCCATCGGTTTTAGTAG 1607
Query 1208 TCACGAAGAAGAAGA-G--GTG---CTTGAAGAGCAGAGTTCGATGAATGGTAGCAGCTT 1261
||||||||||||||| | | | ||||||||||||| ||||||||||||| |||||||
Sbjct 1608 TCACGAAGAAGAAGAAGAAGAGGAGCTTGAAGAGCAGAATTCGATGAATGGTGGCAGCTT 1667
Query 1262 CATAAGAGTGCATTGTCCTTCAGTGAAAGAAGAGGCTGTCTCTAATTGAGAGGTGCTTTA 1321
|| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1668 CACAATAGTGCATTGTCCTTCAGTGAAAGAAGAGGCTGTCTCTAATTGAG-GC-GCTTTA 1725
Query 1322 TAAC 1325
||||
Sbjct 1726 TAAC 1729
> AT4G26850.1 | Symbols: VTC2 | mannose-1-phosphate guanylyltransferase
(GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate
guanylyltransferases;GDP-galactose:myoinositol-1-phosphate
guanylyltransferases;glucose-1-phosphate
guanylyltransferase | chr4:13499010-13501648
REVERSE LENGTH=2084
Length=2084
Score = 785 bits (425), Expect = 0.0
Identities = 795/973 (82%), Gaps = 27/973 (3%)
Strand=Plus/Plus
Query 210 CTCGAATCTCTAGTTCTTGGAGAGTGGGAAGATCGTTTCCAAAGAGGACTTTTTCGCTAT 269
||||| || || ||||| ||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 711 CTCGAGTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTAT 770
Query 270 GATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTTTCATTGCGCAGCTG 329
|||||||| |||||||||||||| ||||| ||||||||||| |||||| |||| |||||
Sbjct 771 GATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTT 830
Query 330 AATGAAGGTCGTCATC-TCAAGAAGAGACCAACCGAGTTCTGTGTTGACAAAGTTCTT-C 387
|| || |||||||| | | |||||||| ||||| |||||| |||| || ||| | || |
Sbjct 831 AACGAGGGTCGTCA-CTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGA-TAAGGTGTTGC 888
Query 388 AACCATTTGATGGAAACAAGTTCAATTTCACTAAAGTTGGTCAAGAAGAGTTGCTTTTCC 447
| | |||||||| | ||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct 889 AGTCTTTTGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCC 948
Query 448 AGTTTGAAGCTAGCAATAACGACGATGATAG-TAAAATCCAGTTCTTGCCGAGTATCCCT 506
||||||||||| | | || | ||| | || | |||||||| || | || |||
Sbjct 949 AGTTTGAAGCT-G--GT---GA--A-GAT-GCCCAAGTTCAGTTCTTCCCTTGCATGCCT 998
Query 507 CTAGACGCGGATAATTCTCCAAGCGTCGTTGCAATCAATGTGAGTCCGATTGAGTATGGA 566
| ||| | || |||||||| || || ||||| |||||||| |||||||| ||||||||
Sbjct 999 ATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGC 1058
Query 567 CATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTGCCTCAAAGGATTGATCACAAAAGC 626
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1059 CATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGC 1118
Query 627 CTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGCTAATCCGTATTTCCGACTTGGATAC 686
||||||||||| |||| ||||| ||||| || |||||||| || ||| |||| || |||
Sbjct 1119 CTTTTGCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTAC 1178
Query 687 AACAGTTTAGGAGCTTTTGCTACCATCAACCATCTTCACTTTCAGGCTTACTATTTGGCA 746
||||| || || |||||||| || ||||| ||||| |||||||||||||| || |||||
Sbjct 1179 AACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCC 1238
Query 747 ATGCAATTCCCGA-TTGAGAAAGCTTCTTCCTTGAAGATCACTACCACTAATAACGGCGT 805
|||| ||||| | | ||||||||| || || |||||| ||||||||| || || ||
Sbjct 1239 ATGCCTTTCCC-ACTGGAGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGT 1297
Query 806 CAAAATCTCAAAAC-TCTTGAA-TTACCCTGTGAGGGGTCTTCTATTTGAAGGTGGAAAC 863
|||||||||| | | || | || |||||||||||| ||||||| ||||||||||||| |
Sbjct 1298 CAAAATCTCAGAGCTTC-T-AAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGC 1355
Query 864 TCCATTAAAGATCTCTCTGATACTGTATCAGA-TGCATCCGTTTGTCTTCAGAACAACAA 922
|| || |||| || ||||||||||| ||||| ||| | ||||| ||||| ||||||||
Sbjct 1356 TCTATGCAAGAACTATCTGATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAA 1414
Query 923 CATTCCTTTCAACATTCTCATCTCTGATTCTGGAAAACAAATCTTCCTTC-TCCCTCAGT 981
||||||||||||||||||||||||||||| ||||| || |||||| || | || ||||
Sbjct 1415 CATTCCTTTCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTC-TTAATGCCACAGT 1473
Query 982 GTTACGCAGAGAAACAAGCTTTAGGAGAAGTTAGCTCAAAGCTATTGGATACGCAAGTGA 1041
|||||||||||||||| ||| |||| ||||| ||| | || ||||||| || |||||||
Sbjct 1474 GTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGA 1533
Query 1042 ATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAAAGAAGACTACGAAG 1101
| ||||| || |||||||| ||||| |||||||| ||||||||||||| || |||||||
Sbjct 1534 ACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAG 1593
Query 1102 GAGCTTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCGT-TATCAGAGGAGAGA 1160
| |||||||| || || || |||||| | || || |||| ||| | | || ||||| ||
Sbjct 1594 GTGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCGGAAGCTTC-TCTGTCGGAGGAAAGG 1652
Query 1161 TTCAAAGAAGTTA 1173
|| || || ||||
Sbjct 1653 TTTAAGGAGGTTA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5