BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950165

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55125.1 | Symbols:  | Ribosomal protein L31 | chr5:22372020...   435    1e-121


> AT5G55125.1 | Symbols:  | Ribosomal protein L31 | chr5:22372020-22373209 
FORWARD LENGTH=616
Length=616

 Score =  435 bits (235),  Expect = 1e-121
 Identities = 255/265 (96%), Gaps = 0/265 (0%)
 Strand=Plus/Plus

Query  9    AGTTGTTGGACAATGAAGAAAGGATTGCACCCACAGATGCAATGGATCTCTTATGTGACG  68
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  132  AGTTGTTGGACAATGAAGAAAGGATTGCACCCACAAATGCAATGGATCTCTTATGTGACA  191

Query  69   CAGAGCGGTAGACTGATGCACGTGATGATGACAAGAATCCACCATGTTGGCAAAGTCTAT  128
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  192  CAGAGCGGTAGATTGATGCACGTGATGATGACAAGAATCCACCATGTTGGCAAAGTTTAT  251

Query  129  CACTTTGGAGCTAAGCGTCAGATGGCTCAAAGCATTGGTCAGATTGCCAAGTTCAAGCGT  188
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  252  CACTTTGGAGCTAAGCGTCAAATGGCTCAAAGCATTGGTCAGATTGCCAAGTTCAAGCGT  311

Query  189  AGGTTTAACGAGCAAGAGGCAGAAGCGGCCGAGGAGAATAACAATGAGAACCAGAACAAG  248
            |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct  312  AGGTTTAACGAGCAAGAGGCAGAAGCTGCCGAGGAGAACAACAACGAGAACCAGAACAAG  371

Query  249  TAGCTGCAAACCAACTCTTTTATCT  273
            |||||| |||||||||||||| |||
Sbjct  372  TAGCTGTAAACCAACTCTTTTGTCT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5