BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950166
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55130.1 | Symbols: CNX5, SIR1 | co-factor for nitrate, redu... 2281 0.0
> AT5G55130.1 | Symbols: CNX5, SIR1 | co-factor for nitrate, reductase
and xanthine dehydrogenase 5 | chr5:22373180-22376086
REVERSE LENGTH=1647
Length=1647
Score = 2281 bits (1235), Expect = 0.0
Identities = 1367/1432 (95%), Gaps = 4/1432 (0%)
Strand=Plus/Plus
Query 1 TTGGTTCTCTAACATCGTCGTGATGATGTCGAACGGTGGAGATTCGCCGGAAATTGTCCG 60
||||||||||||||| ||||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 37 TTGGTTCTCTAACATTGTCGTTATGATGTCCAACGGTGGTGATTCGTCGGAAATTGTCCG 96
Query 61 GGAATTGGAAGAGTTAAAGCTCAAGAAGGCAGAAATAGAGCACCGTATTTCGACCCTCGA 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 GGAACTGGAAGAGTTAAAGCTCAAGAAGGCAGAAATAGAGCACCGTATTTCGACCCTCGA 156
Query 121 AGCTAAGCTCCAGGATACGGCGGCGGTTGAACGGTACGACGCCGTATCCAACGGTGACTC 180
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 157 AGCTAAGCTCCAGGATACGGCGGCAGTTGAACTGTACGACGCCGTATCCAACGGTGACTC 216
Query 181 TTATCCAACGGCGCCGGAGCTTGAACATGGGTTATCTCCGGATCAGATTTACCGTTATAG 240
||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 217 TTATCTGACGGCACCGGAGCTTGAACATGGGTTATCTCCAGATCAGATTTACCGTTATAG 276
Query 241 TCGTCAATTGTTACTCCCTTCGTTTGCTGTTGAAGGGCAGTCAAATCTTTTGAAGTCTTC 300
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCGTCAACTGTTACTTCCTTCGTTTGCTGTTGAAGGGCAGTCAAATCTTTTGAAGTCTTC 336
Query 301 AGTATTAGTTATTGGAGCTGGAGGACTGGGTTCACCTGCCTTATTGTATCTTGCAGCATG 360
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 337 GGTATTAGTTATTGGAGCAGGAGGACTAGGTTCACCTGCCTTATTGTATCTTGCAGCATG 396
Query 361 TGGTGTTGGTC-GCTTGGGTATTATAGATCATGATGTTGTAGAGCTCAACAATATGCACA 419
||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 397 TGGTGTTGGTCAG-TTGGGTATTATCGATCATGATGTTGTAGAGCTCAACAATATGCATA 455
Query 420 GGCAGATTATACACACAGAAGCATTTATTGGTCATCCCAAAGTGAAATCTGCTGCTGCTG 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 GGCAGATTATACACACAGAAGCATTTATTGGACATCCCAAAGTGAAATCTGCTGCTGCTG 515
Query 480 CTTGTCGCTCAATAAATTCGACGATCAAAGTTGATGAATATGTGGAAGCTCTTCGCACTT 539
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTTGTCGCTCGATAAATTCAACGATCAAAGTTGATGAATATGTGGAAGCTCTTCGCACTT 575
Query 540 CCAATGCTTTGGAAATCCTTAGCCAATATGATATCATAGTAGATGCGACTGATAATCCTC 599
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 576 CCAATGCTTTGGAAATCCTCAGCCAATATGATATCATAGTCGATGCGACTGATAATCCTC 635
Query 600 CAAGCCGTTACATGATCAGCGATTGTTGTGTCCTGTTAGGAAAGCCTTTGGTTTCGGGTG 659
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 636 CAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGCCTTTGGTGTCGGGTG 695
Query 660 CTGCACTTGGGATGGAAGGGCAGCTTACGGTTTATAATCACAACGGAGGCCCGTGTTACC 719
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 696 CTGCGCTTGGTATGGAAGGGCAGCTTACGGTTTATAATCATAACGGAGGCCCGTGTTACC 755
Query 720 GGTGTCTTTTTCCCACTCCTCCACCTACCTCAGCATGCCAAAGATGTTCTGATAGTGGAG 779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 756 GGTGTCTTTTTCCCACTCCTCCACCTACCTCAGCGTGCCAAAGATGTTCTGATAGTGGAG 815
Query 780 TTCTTGGAGTAGTTCCGGGTGTTATTGGTTGTCTACAAGCGCTAGAGACAATTAAACTCG 839
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTCTTGGAGTAGTGCCAGGTGTTATTGGTTGTCTACAAGCGCTAGAGACAATTAAACTCG 875
Query 840 CGAGCATGGTGGGAGAACCACTCTCTGAACGGATGCTTCTTTTTGATGCTTTATCAGCAA 899
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CAAGCCTGGTGGGAGAACCACTCTCTGAACGGATGCTTCTTTTTGATGCTTTATCAGCAA 935
Query 900 GGATGCGCATTGTAAAGATCAGAGGCAGGTCATCACAGTGCATAGTGTGTGGAGACAATT 959
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 936 GGATGCGCATTGTCAAGATCAGAGGCAGGTCATCACAGTGCACCGTGTGTGGAGACAATT 995
Query 960 CATCTTTCAATAAGCAAACGTTTAAAGATTTTGACTATGAGGACTTCACCCAATTTCCTT 1019
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 996 CATCTTTCAATAAGCAAACTTTTAAAGATTTTGACTATGAGGACTTCACTCAATTTCCTT 1055
Query 1020 TATTTGCGGGCCCATTGAACCTGCTTCCTGCAGAATCAAGAATTAGCAGCAAGGAGTTCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TATTTGCGGGCCCATTGAACCTGCTTCCTGCAGAATCAAGAATTAGCAGCAAGGAGTTCA 1115
Query 1080 AACAAATTCTTCAAAAGAAGGAACAGCATATTCTGCTCGATGTTCGACCTTCGCATCACT 1139
|| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1116 AAGAAATTCTTCAAAAGAAGGAACAACATGTTCTGCTCGATGTTCGACCTTCACATCACT 1175
Query 1140 ATAAGATTGTCTCTCTCCCGGATTCACTTAACATCCCTCTTGCAAACTTAGAGGCTCGGT 1199
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1176 ATAAGATTGTCTCTCTCCCGGATTCACTCAACATCCCTCTTGCAAACTTAGAGACTCGGT 1235
Query 1200 TAAACGAGCTTACTTCAGCTCTTAAAGAAAAGG-AAGACGGCCATGTTAACACCGGATCT 1258
||||||||||||||||||||||||||||||||| || | ||||||| ||||| | ||||
Sbjct 1236 TAAACGAGCTTACTTCAGCTCTTAAAGAAAAGGGAA-ATGGCCATGCGAACACTGAATCT 1294
Query 1259 TGCACAAATCCTAGTGTCTACGTTGTTTGCAGACGCGGGAATGATTCACAGAGAGCTGTT 1318
||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1295 TGCACAAATCCTAGTGTCTTCGTTGTATGCAGACGCGGGAATGATTCACAAAGAGCTGTT 1354
Query 1319 CAATATCTTTGTGAATCAGGTTTCGATTCAGCCAAGGATATAATTGGAGGACTGGAAGCT 1378
||||||||| |||| || ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1355 CAATATCTTCGTGAGTCGGGTTTTGATTCGGCTAAGGATATAATTGGAGGACTGGAAGCT 1414
Query 1379 TGGGCAGCCAATGTCAACCCCAACTTCCCCACCTATTAGAGGGAAACTTTTT 1430
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1415 TGGGCAGCCAATGTCAACCCCAACTTCCCCACCTACTAGAGGGAAACTTTTT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5