BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950171
Length=433
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubi... 568 2e-161
AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubi... 335 2e-91
> AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like
modifier 2 | chr5:22383560-22384925 REVERSE LENGTH=691
Length=691
Score = 568 bits (307), Expect = 2e-161
Identities = 337/350 (96%), Gaps = 7/350 (2%)
Strand=Plus/Plus
Query 90 ACAGGATGGTAATGAAGTCTTTTTTAGGATCAAGAGAAGCACTCAGCTCAAAAAGCTGAT 149
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 262 ACA-GATGGTAATGAAGTCTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAAAAACTGAT 320
Query 150 GAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGG 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGG 380
Query 210 TCGTCGTCTTCGTGCAGAGCAGACTCCAGATGAGCTTGAAATGGAAGATGGAGATGAGAT 269
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGCTTGAAATGGAAGATGGAGATGAGAT 440
Query 270 TGATGCAATGCTTCATCAGACTGGTGGTGCTGCT---AATGGCCTGAAGCTGTTCTGCTT 326
|||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 441 CGATGCAATGCTTCATCAGACTGGTGGTGGTGCTAAAAATGGCCTGAAGCTCTTCTGCTT 500
Query 327 TTAGTGGC---TATTTTAATGGTTTTCCATAAGATTGTGTGATATTAATGGATTTAGTGA 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TTAGTGGCGGTTATTTTAATGGTTTTCCATAAGATTGTGTGATATTAATGGATTTAGTGA 560
Query 384 ATCGGCTTTAGATTAAATTTGGCAGGCTTTGTTTTACTTTGACCAGTTTC 433
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATCGGCTTTAGATTAAATTTGGCAGGCTTTGTTTTACTTTGACCAGTTTC 610
Score = 159 bits (86), Expect = 1e-38
Identities = 93/96 (97%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 1 GTATAATCTGAT-A-AAAGTAAGATGTCTGCTACTCAGGAAGAAGACAAGAAGCCTGACC 58
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 GTATAATCTGATAATAAAGTAAGATGTCTGCTACTCCGGAAGAAGACAAGAAGCCTGACC 190
Query 59 AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG 94
||||||||||||||||||||||||||||||||||||
Sbjct 191 AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG 226
> AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubiquitin-like
modifier 1 | chr4:13497326-13498730 FORWARD LENGTH=715
Length=715
Score = 335 bits (181), Expect = 2e-91
Identities = 249/281 (89%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 21 GATGTCTGC-TACTCAGGAAGAAGACAAGAAGCC---TGACCAAGGAGCTCACATCAATC 76
||||||||| || ||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 140 GATGTCTGCAAAC-CAGGAGGAAGACAAGAAGCCAGGAGACGGAGGAGCTCACATCAATC 198
Query 77 TCAAAGTCAAGGGACAGGATGGTAATGAAGTCTTT-TTTAGGATCAAGAGAAGCACTCAG 135
|||||||||||||||||||||| || || || ||| ||||||||||||||||||||||||
Sbjct 199 TCAAAGTCAAGGGACAGGATGGAAACGAGGT-TTTCTTTAGGATCAAGAGAAGCACTCAG 257
Query 136 CTCAAAAAGCTGATGAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCT 195
||||| |||||||||||||||||||||||||| || |||||||| | ||||| ||||||
Sbjct 258 CTCAAGAAGCTGATGAATGCTTACTGTGACCGGCAATCTGTGGACATGAACTCCATTGCT 317
Query 196 TTCTTGTTTGATGGTCGTCGTCTTCGTGCAGAGCAGACTCCAGATGAGCTTGAAATGGAA 255
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 318 TTCTTGTTTGATGGGCGTCGTCTTCGTGCTGAGCAAACTCCCGATGAGCTTGACATGGAG 377
Query 256 GATGGAGATGAGATTGATGCAATGCTTCATCAGACTGGTGG 296
||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 378 GATGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20559509341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5