BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950172

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubi...   159    1e-38
  AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubi...   104    6e-22


> AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like 
modifier 2 | chr5:22383560-22384925 REVERSE LENGTH=691
Length=691

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 93/96 (97%), Gaps = 1/96 (1%)
 Strand=Plus/Plus

Query  1    GTATAATCTGATAA-AAAGTAAGATGTCTGCTACTCAGGAAGAAGACAAGAAGCCTGACC  59
            |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  131  GTATAATCTGATAATAAAGTAAGATGTCTGCTACTCCGGAAGAAGACAAGAAGCCTGACC  190

Query  60   AAGGAGCTCACATCAATTTCAAAGTCAAGGGACAGG  95
            ||||||||||||||||| ||||||||||||||||||
Sbjct  191  AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG  226


> AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubiquitin-like 
modifier 3 | chr5:22385307-22386114 REVERSE LENGTH=540
Length=540

 Score =  104 bits (56),  Expect = 6e-22
 Identities = 262/353 (74%), Gaps = 48/353 (14%)
 Strand=Plus/Plus

Query  59   CAAGGAGCTCACATCAATT-TCAAAGTCAAGGGACAGGAT-GATAATGAAGTCTTCTTTA  116
            |||| ||||||  || ||| |||| |||||| | |||||| ||  | |||||||| ||||
Sbjct  83   CAAGAAGCTCATGTC-ATTCTCAAGGTCAAGAGCCAGGATGGA-GACGAAGTCTTATTTA  140

Query  117  GGCTCAAGAGAAGCACT-CAGCTTAAGAAGCTTATGAATGCTTACTGTC-ACCGTC-A-A  172
             |  ||| | |||| || || ||||| ||||| ||| ||| |||||| | |||| | |  
Sbjct  141  AGAACAAAAAAAGCGCTCCA-CTTAAAAAGCTCATGTATGTTTACTG-CGACCGCCGAGG  198

Query  173  TCTGAGGATATCA-ACTCAATT-G-TTTAC-TTCTTTGATGGTCG-TCGTCTTCGT-GCA  226
            | |||  | || | || | ||| | ||| | || ||| ||||  | |||| |  || || 
Sbjct  199  TTTGA--A-ATTAGACGC-ATTCGCTTT-CATT-TTTAATGG-AGCTCGTATAGGTGGCC  251

Query  227  GGGCAGACTGTAGATGAGCTTGATATGGAAGATGGAGATGTGATCTATGCGTGCCACTCA  286
             || |||||  |||||||||||||||||||||||||||||||||  |||||||||     
Sbjct  252  TGG-AGACTCCAGATGAGCTTGATATGGAAGATGGAGATGTGATAGATGCGTGCCG----  306

Query  287  CAAGGCGGTG-GTCTACAAGCAGATCATGGTCTACGAGCAGATCAGCGTCAGTGGTCTTA  345
               |||| || ||      |  | |   |||||||||||| |||||||||||||||||||
Sbjct  307  ---GGCGATGAGT------G--G-T---GGTCTACGAGCAAATCAGCGTCAGTGGTCTTA  351

Query  346  TATGGTTTTCGATCATAATCGGCTCTAG---GGA-TAATTTGGCAGGCTTTGT  394
            |||| |||||||||||||| |||| ||    ||| ||||||||| ||||||||
Sbjct  352  TATGCTTTTCGATCATAATGGGCTTTAATTAGGAATAATTTGGCTGGCTTTGT  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18599067130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5