BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950175
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 268 4e-71
> AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64910.1); Has
33260 Blast hits to 16857 proteins in 1270 species: Archae
- 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants
- 1371; Viruses - 424; Other Eukaryotes - 13285 (source:
NCBI BLink). | chr5:3127906-3131727 FORWARD LENGTH=1772
Length=1772
Score = 268 bits (145), Expect = 4e-71
Identities = 248/295 (84%), Gaps = 18/295 (6%)
Strand=Plus/Plus
Query 463 GGAATTTGTCGATGGTCTGATTGAAGATGAAGCATTACCTGTTGAACAAAAGGATGAATT 522
||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||||||
Sbjct 1209 GGAATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAGCGGATGAATT 1268
Query 523 CAACGAAT-TCGTCAAAGAGCAAGTTCGAGCAGCGAAGAAAGC-AAGCAAAGAGGCCAAA 580
||| |||| | ||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 1269 CAAAGAATAT-GTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATC-GAGAGGCCAAA 1326
Query 581 GTTGCTCGAGAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGGAAGCCTTTGAAAAC 640
| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1327 GATGCTCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAG 1386
Query 641 ATGAAGATCTACAAATTCTACCCTCGGCATTCACCAGACGTC-CCTAG--GT-TCAAGAC 696
|||||| |||||||||||||||||| || ||||||||| | || || || || |
Sbjct 1387 ATGAAGTTCTACAAATTCTACCCTCAGCCTTCACCAGATA-CACC-AGACGTCTCTGGT- 1443
Query 697 GTC--GTC---ATACATTAACCAATACTACGGGAAAG-CTCATCAAGTCCTTTGA 745
||| ||| || |||||||| |||||| || |||| ||||| |||||||||||
Sbjct 1444 GTCCAGTCCCCATTCATTAACCGATACTATGG-AAAGGCTCATGAAGTCCTTTGA 1497
Score = 176 bits (95), Expect = 3e-43
Identities = 130/146 (89%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 322 GAGGAGAGCTGCTCTCAGACATATGAAGGAAGATC--GTGTAAAAATGTTTGAGTATTGT 379
||| ||| ||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct 1029 GAGAAGATCTGCTCTCAGACATATGAAGGAAGATCAACT-TAAGAA-GTTTGAGTATTGC 1086
Query 380 CTTCCTTATTTCTAT-AACCCATTGAAGGAAGATGAACTTGAACAGAGTACTGAGGTCGA 438
||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1087 CTTCCTTATTTCTATCAACCC-TTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCA 1145
Query 439 CATATTGTTCCCCTCTGAACCGCCGG 464
||| |||||||||||||||| ||||
Sbjct 1146 AATAATGTTCCCCTCTGAACCCCCGG 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5