BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950176
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392... 1151 0.0
AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear p... 763 0.0
> AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392176-22394172
FORWARD LENGTH=990
Length=990
Score = 1151 bits (623), Expect = 0.0
Identities = 676/702 (96%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 4 TAGCTTCACTTTCGTCGATGGCAT-TACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 62
|||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 93 TAGCTTCACTTTCGCCGATGGC-TCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 151
Query 63 AAGCTCGTCATCGTTGGTGATGGAGGCACAGGGAAAACCACATTTGTAAAGAGACATCTT 122
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 152 AAGCTCGTTATCGTTGGCGATGGAGGCACAGGGAAGACCACATTTGTAAAGAGACATCTT 211
Query 123 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 271
Query 183 TTCTTCACTAACTGTGGCAAGATCCGTTTTTACTGTTGGGATACTGCCGGACAAGAGAAA 242
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 272 TTCTTCACTAACTGTGGCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAA 331
Query 243 TTTGGTGGTCTGAGGGATGGTTACTATATCCATGGGCAATGTGCCATCATCATGTTTGAT 302
||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 332 TTTGGTGGTCTTAGGGATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGAT 391
Query 303 GTCACAGCACGTCTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTC 362
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GTCACAGCACGACTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTT 451
Query 363 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTCAAGAACAGGCAAGTC 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 452 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTC 511
Query 423 AAGGCCAAGCAAGTAACTTTCCATAGGAAGAAGAATCTCCAGTATTACGAAATATCTGCC 482
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 512 AAGGCCAAGCAGGTAACATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCC 571
Query 483 AAGAGCAACTACAATTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AAGAGCAACTACAACTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 631
Query 543 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACATG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 632 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACTTG 691
Query 603 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCGGCAGCAAGTCAGCCACTTCCTGAT 662
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 692 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCAGCAGCAAGTCAGCCACTTCCTGAT 751
Query 663 GACGATGATGACACCTTTGAGTAGAGACAGAGAGATGTGATC 704
||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 752 GACGATGATGACACCTTCGAGTAGAGAAAGAGAGATGTGATC 793
> AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear
protein 2 | chr5:6762724-6764671 FORWARD LENGTH=1049
Length=1049
Score = 763 bits (413), Expect = 0.0
Identities = 586/670 (87%), Gaps = 10/670 (1%)
Strand=Plus/Plus
Query 21 ATGGCAT-TACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTCATCGTTGG 79
||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 94 ATGGC-TCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTGG 152
Query 80 TGATGGAGGCACAGGGAAAACCACATTTGTAAAGAGACATCTTACTGGAGAGTTTGAGAA 139
||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 153 TGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGAA 212
Query 140 GAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTG-ATTTCTTCACTAACTGTG 198
|||||||||||| ||||||||||| |||||||||||| ||| |||||||||| ||||| |
Sbjct 213 GAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCT-TTGGATTTCTTCACAAACTGCG 271
Query 199 GCAAGATCCGTTTTTACTGTTGGGATACTGCCGGACAAGAGAAATTTGGTGGTCTGAGGG 258
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
Query 259 ATGGTTACTATATCCATGGGCAATGTGCCATCATCATGTTTGATGTCACAGCACGTCTGA 318
|||| ||||| |||||||| |||||||| || || |||||||| ||||||||| | || |
Sbjct 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
Query 319 CATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAA 378
|||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
Query 379 TTGTTCTTTGTGGGAATAAAGTTGATGTCAAGAACAGGCAAGTCAAGGCCAAGCAAGTAA 438
||||||| ||||| || ||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
Query 439 CTTTCCATAGGAAGAAGAATCTCCAGTATTACGAAATATCTGCCAAGAGCAACTACAATT 498
| ||||| |||||||||||||| ||||| || || ||||| || |||||||||||||| |
Sbjct 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
Query 499 TCGAGAAGCCATTCTTGTACCTTGCTAG-AAAGCTCGCCGGGGACGCT-AATCTTCACTT 556
|||||||||| ||||||||||||||||| ||| || || || ||| | || ||||||||
Sbjct 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAA-CTGGCTGGAGAC-CAGAACCTTCACTT 629
Query 557 TGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACATGGCTGCTCAGCAGCA 616
|||||| ||||| || |||||||| || || ||||| | ||||| ||||||||||||||
Sbjct 630 TGTGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCA 689
Query 617 GCATGAGGCGGAGCTTGCAGCGGCAGCAAG-TCAGCCACTTCCTGATGACGATGATGACA 675
| ||||||| || |||||||| || ||| | |||||| || || ||||| |||||||||
Sbjct 690 GAATGAGGCCGATCTTGCAGCTGCTGCA-GCTCAGCCTCTCCCCGATGATGATGATGACG 748
Query 676 CCTTTGAGTA 685
| ||||||||
Sbjct 749 CATTTGAGTA 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5