BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950184
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55280.1 | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of ... 2314 0.0
> AT5G55280.1 | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of
bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420652-22422649
REVERSE LENGTH=1512
Length=1512
Score = 2314 bits (1253), Expect = 0.0
Identities = 1352/1401 (97%), Gaps = 2/1401 (0%)
Strand=Plus/Plus
Query 1 GAAAGCAGAGGAAGTAAACAATGGCGATAATTCCGTTAGCGCAGCTCAATGAGCTAACGA 60
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 103 GAAAGCAGAGGAAGTAAACAATGGCGATAATTCCGTTAGCACAGCTTAATGAGCTAACGA 162
Query 61 TTTCTTCATCGTCTTCTACATTTCTTGCGAAATCGTTATGTTCTCATTCGTTGCATAGTA 120
|||||||||| |||||| | |||||| | |||||| ||| ||||||||||||||||||||
Sbjct 163 TTTCTTCATCTTCTTCTTCGTTTCTTACCAAATCGATATCTTCTCATTCGTTGCATAGTA 222
Query 121 GCTGTGTGTGCGCAAGTACTAGAATCAGTCAATTCCGTGGCGGCTTCTCAAAACGAAGAA 180
|||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 223 GCTGCATTTGCGCAAGTTCTAGAATCAGTCAATTCCGTGGCGGCTTCTCTAAACGAAGAA 282
Query 181 GCGATTCCACAAGGTCTAAATCGATGCGGTTGAGATGTTCCTTCTCTCCGATGGAGTCTG 240
||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 283 GCGATTCAACAAGGTCTAAGTCGATGCGATTGAGGTGTTCCTTCTCTCCGATGGAATCTG 342
Query 241 CGAGAATTAAGGTTG-TTGGTGTCGGTGGTGGTGGTAACAATGCCGTTAACCGGATGATT 299
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CGAGAATTAAGG-TGATTGGTGTCGGTGGTGGTGGTAACAATGCCGTTAACCGGATGATT 401
Query 300 TCAAGCGGTTTACAGAGTGTTGATTTCTATGCGATAAACACGGACTCTCAAGCTCTGTTA 359
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 402 TCAAGCGGTTTACAGAGTGTTGATTTCTATGCGATAAACACGGATTCGCAAGCTCTGTTA 461
Query 360 CAATCTTCTGCTGAGAACCCACTTCAAATTGGAGAGCTTTTAACTCGTGGGCTTGGTACT 419
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 462 CAGTCTTCTGCTGAGAACCCACTTCAAATTGGAGAACTTTTAACTCGTGGGCTTGGCACT 521
Query 420 GGTGGAAACCCGCTTCTCGGTGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAAT 479
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 522 GGTGGAAACCCGCTTCTTGGAGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAAT 581
Query 480 GCTCTTAAAGGATCAGACCTTGTTTTCATTACTGCTGGTATGGGTGGTGGAACAGGGTCT 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 582 GCTCTTAAAGGATCAGACCTTGTTTTCATAACTGCTGGTATGGGTGGTGGAACAGGGTCT 641
Query 540 GGTGCTGCACCTGTGGTAGCTCAGATTTCGAAGGATGCTGGTTACTTGACTGTTGGTGTT 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 642 GGTGCTGCACCTGTGGTAGCTCAGATTTCGAAGGATGCTGGTTATTTGACTGTTGGTGTT 701
Query 600 GTTACCTATCCGTTTAGCTTTGAAGGACGTAAAAGATCTTTGCAGGCACTGGAAGCTATT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GTTACCTATCCGTTTAGCTTTGAAGGACGTAAAAGATCTTTGCAGGCACTGGAAGCTATT 761
Query 660 GAAAAGCTCCAAAAGAATGTTGATACCCTTATTGTGATTCCAAATGATCGTCTGCTAGAT 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 762 GAAAAGCTCCAAAAGAATGTTGATACCCTTATCGTGATTCCAAATGATCGTCTGCTAGAT 821
Query 720 ATTGCTGATGAACAGACGCCGCTTCAGGATGCTTTTCTTCTTGCAGATGATGTTTTACGC 779
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 822 ATTGCTGATGAACAGACGCCACTTCAGGACGCGTTTCTTCTTGCAGATGATGTTTTACGC 881
Query 780 CAAGGAGTACAAGGAATCTCAGATATTATTACTATACCTGGACTGGTCAATGTAGATTTT 839
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 882 CAAGGAGTACAAGGAATCTCAGATATTATTACTATACCTGGACTAGTCAATGTAGATTTT 941
Query 840 GCAGATGTGAAGGCAGTAATGAAAGATTCTGGAACTGCAATGCTCGGGGTAGGTGTTTCT 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCAGATGTGAAGGCAGTCATGAAAGATTCTGGAACTGCAATGCTCGGGGTAGGTGTTTCT 1001
Query 900 TCCAGCAAGAACCGGGCAGAAGAAGCAGCTGAACAAGCGACTTTGGCTCCATTGATCGGA 959
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1002 TCCAGCAAAAACCGGGCAGAAGAAGCAGCTGAACAAGCAACTTTGGCTCCATTGATCGGA 1061
Query 960 TCATCCATACAATCAGCTACTGGTGTCGTCTACAACATCACTGGTGGAAAAGACATAACT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TCATCCATACAATCAGCTACTGGTGTCGTCTACAACATCACTGGTGGAAAAGACATAACT 1121
Query 1020 TTGCAGGAAGTAAACCGAGTATCGCAGGTTGTGACAAGTTTGGCAGACCCATCAGCCAAC 1079
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1122 TTGCAGGAAGTGAACCGAGTATCACAGGTCGTGACAAGTTTGGCAGACCCATCGGCCAAC 1181
Query 1080 ATCATATTTGGAGCTGTTGTGGATGATCGTTACACCGGAGAGATTCATGTAACGATAATC 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1182 ATCATATTTGGAGCTGTTGTGGATGATCGCTACACCGGAGAGATTCATGTAACGATAATC 1241
Query 1140 GCCACAGGCTTCTCACAGTCATTCCAGAAGACACTTCTGACTGATCCAAGAGCAGCTAAA 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GCCACAGGCTTCTCTCAGTCATTCCAGAAGACACTTCTGACTGATCCAAGAGCAGCTAAA 1301
Query 1200 CTCCTGGACAAAATGGGATCATCAGGTCAACAAGAGAACAAAGGAATGTCTCTGCCTCAC 1259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CTCCTTGACAAAATGGGATCATCAGGTCAACAAGAGAACAAAGGAATGTCTCTGCCTCAC 1361
Query 1260 CAGAAGCAGTCTCCATCAACTATCTCTACCAAATCATCTTCTCCCCGTAGActtttcttc 1319
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1362 CAGAAGCAGTCTCCATCAACTATCTCTACCAAATCGTCTTCTCCCCGTAGACTTTTCTTC 1421
Query 1320 tagttttcttttttgccttttcggttttAAGCATCAAAAATGTAACGATCTTCAGGCTCA 1379
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1422 TAGTTTTCTTTTTTTCCTTTTCGGTTTCAAGCATCAAAAATGTAACGATCTTCAGGCTCA 1481
Query 1380 AATATCAATTACATTTTATTT 1400
|||||||||||||||| ||||
Sbjct 1482 AATATCAATTACATTTGATTT 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5