BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950187
Length=2779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 bet... 4346 0.0
AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha | ... 1247 0.0
> AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta
| chr5:22430176-22435076 REVERSE LENGTH=3068
Length=3068
Score = 4346 bits (2353), Expect = 0.0
Identities = 2657/2802 (95%), Gaps = 28/2802 (1%)
Strand=Plus/Plus
Query 1 AATAACTTGCCTTGTTGGGTATGGCCACTGAGGCGTTTGTGAAGCCAGTTGTGCCAAATG 60
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 82 AATAACTTGCCTTGTTGGGTATGGCCACTGAGGCGTTTGTGAAACCCGTTGTACCAAATG 141
Query 61 GTCATGACGGGTACGAGGATGAAGATGAAGATGACATTCCTTTGGTGTTTAAGAGAACCA 120
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 142 GTCATGACGGGTACGAAGATGAAGATGAAGATGACATTCCTTTGGTTTTTAAGAGAAACA 201
Query 121 GTAATACAGCATCAACCACAAATCGTTCAAGGCCTATTGATAATGCTATGAGAAACTCGG 180
||||||||||| | || ||||||||| | || |||||| |||||||||||||||||||||
Sbjct 202 GTAATACAGCAGCTACAACAAATCGTCCTAGCCCTATTAATAATGCTATGAGAAACTCGG 261
Query 181 TTATTGGCTCCACCAAGTCCCCACCACCAATGAGGTCTCCTTTAACAAGCCCGAATAGGT 240
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 262 CTATTGGTTCCACCAAGTCCTCACCACCAATGAGGTCTCCTTTAACAAGCCCGAATAGGT 321
Query 241 CAGCTTCTTCATCTGCTAGAAGTTCAATGATGAAACCAACAACATTACCGTCATCTTCAT 300
||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 322 CAGCTTCTTCATCCACTAGAAGTTCAATGATGAAA-C--CAGCATTACCGTCATCTTCAT 378
Query 301 CTGTTCAACGTTCGACTGTGAAGTCACCGTTGCGAGATGATAGATCCGTTGTTGCTAAGG 360
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 CTGTTCAACGTTCGACTCTGAAGTCACCGTTGCGAGATGATAGATCTGTTGTTGCTAAGG 438
Query 361 AGAGGAACGG-TTTGGGAAAAGCTCCCTCTGTCTCCAAAACTGATGATGAGGATTCTGAG 419
|||||||||| |||||| |||||||| ||||| || |||| |||||||||||||||||||
Sbjct 439 AGAGGAACGGTTTTGGG-AAAGCTCCTTCTGTGTCTAAAAGTGATGATGAGGATTCTGAG 497
Query 420 GATGATAAACCCTTGAGTGCCAGACTTAAAATGGATTCTAAGGAGGTTATCAAACAGCCG 479
||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||
Sbjct 498 GATGATAAACCATTGAGTGCTAGGCTTAAATTGGATTCTAAAGAGGTTACCAAACAGCCA 557
Query 480 AGCTCTTCCGGGCGTGGGAATATGCAGCAAGCAGTACAGAAGAGCAACATGAGGCCTCAG 539
|||||||| || ||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 558 AGCTCTTCAGGACGTGGGAGTACGCAGCAAGCAGTACAAAAGAGCAACATGAGGCCTCAG 617
Query 540 GGATCGAGCGATAACACTAAAAAGAAAGTTTTGGATGAGAGAGCTCCCGTGTCCTCAATG 599
|||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 618 GGATTGAGTGATTACACTAAAAAGAAAGTTTTGGATGAGAGAGCTCCCATGTCCTCAACG 677
Query 600 GTTCAGACAAAGACCAGTGTGGGTACATCAAGTAGCAAGCCTGTTCATAATGAACAGAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 678 GTTCAGACAAAGACCAGTGTGGGTACATCAAGTAGCAAGCCTGTTCATATTGAACAGAAG 737
Query 660 AGACCTTTGGTTAACAATATCAATCGGAATGGCTTAAAACCGAAGACTGAAGGGGTCAGT 719
|||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||
Sbjct 738 AGACCTTTGGTTAACAATATTGATCGGAATGGTTTGAAACCTAAGACTGAAGGGCACAGT 797
Query 720 TCTCAGGCACCTGCTAAGAGACCTCTTGAGAAGGGGAGTTCTTCGAATCAATCTTCTGTT 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 798 TCTCAGGCACCTGCTAAGAGACCTCTTGAAAAGGGGAGTTCTTCGAATCAATCTTCTGTT 857
Query 780 AAGAGGCTCAAGCTGTCAGAGCCAGCTAGACCAGTGAAAGTGGAACAAGGTTCACATAAT 839
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 858 AAGAGGCCCAAGCTGTCAGAGCCAGCTAGACCAGTGAAAGTGGAGCAAGGTTCACATATT 917
Query 840 GCAGCTACGCAAGATGCCAAAGGAAAGAATCTGGATGCATCAAAGCCGTTGAGAGCTAAC 899
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 918 TCAGCTACGCAAGATGCCAAAGGAAAGAATCTGGATGCATCGAAGCCGTTGAGAGCTAAC 977
Query 900 AAAGCAACTGTTAAAGAAGATAACTCAGATGATGATGATCATGTTCCTATTGCCTCAAGG 959
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 978 CAAGCAACTGTTAAAGAAGATAACTCAGATGGTGATGATCATGTTCCTATTGCCTCAAGG 1037
Query 960 ATAAAGTCAGATTCCTC-----A-AAATCTTCCTCCGCGAAGCCAAGTTCTAGTAAAACG 1013
|| |||||||||||||| | ||||| || ||||| ||||||||||||||||||| |
Sbjct 1038 ATGAAGTCAGATTCCTCAAATAATAAATCGTCTTCCGCAAAGCCAAGTTCTAGTAAAATG 1097
Query 1014 ATCGCTTCTTCATCCAGAATAATAGCTAAAAAGCCCAACAAATGGGTGAAAGATTCTAAG 1073
|| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1098 ATAGCGTCTTCATCCAGAACAATAGCTCAAAAGCCCAACAAATGGGTGAAAGATTCTAAA 1157
Query 1074 TATTCGAAATCTTCAAAATCATTACCTTCTGGAGATGGGCAAACGAAATGGAAAACTCTA 1133
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1158 TATTCGAAATCTTCTAAATCATTACCTTCTGGAGATGGGCAAAAGAAATGGAAAACTCTA 1217
Query 1134 GAGCACAATGGTGTCATTTTTCCACCTTCATATAAGCGTCATGGGGTTAAGATATTGTAT 1193
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1218 CAGCACAATGGTGTTATTTTTCCACCTCCATATAAGCGTCATGGGGTTAAGATATTGT-T 1276
Query 1194 -CAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGT 1252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CCAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGT 1336
Query 1253 GATGAGGGAAACAGAATATTACAATAAACCAAAGTTCAGAGAGAATTTCTGGAATGATTG 1312
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1337 GATGAGGGAAACAGAATATTATAAAAAACCAAAGTTCAGAGAGAATTTCTGGAATGATTG 1396
Query 1313 GCGGAGACTACTTGGAAAGAACCATATGATTAAAAATTTGGATGATTGTGACTTCACTCC 1372
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1397 GCGGAAACTACTTGGAAAGAACCATATGATTAAAAGTTTAGATGATTGTGACTTCACTCC 1456
Query 1373 CATATATGAATGGTATATACAGGAGAAGGAGACAAAGAAACTAATGACTGCAGAAGAGAA 1432
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1457 CATATATGAATGGTATATGCAGGAGAAGGAGACAAAGAAACAAATGACTGCAGAAGAGAA 1516
Query 1433 AAGGATTTTGAAAGAGGAGAAATTAAAGCAGGAGGAGAAATACATGTGGGCTGTTCTTGA 1492
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1517 AAGGATTGTGAAAGAGGAGAAATTAAAGCAGGAGGAGAAATATATGTGGGCTGTTCTTGA 1576
Query 1493 TGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGCCCCCTGGGTTGTTTCGAGGCCG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGCCCCCTGGGTTGTTTCGAGGCCG 1636
Query 1553 GGGAGAACATCCTAAGATGGGGAAACTGAAAAAGCGGATTCGTCCTTGTGATATTACAAT 1612
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GGGAGAACATCCCAAGATGGGGAAACTGAAAAAGCGGATTCGTCCTTGTGATATTACAAT 1696
Query 1613 CAACATTGGTAAAGAGGCGCCTGTTCCAGAATGCCCTATCCCTGGTGAAAGATGGAAAGA 1672
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1697 CAACATTGGTAAAGAGGCGCCTATTCCAGAATGCCCTATCCCTGGTGAAAGATGGAAAGA 1756
Query 1673 AGTTAAGCATGACAATACTGTTACCTGGCTTGCTTTTTGGAATGATCCTATCAATCCAAA 1732
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1757 AGTTAAGCATGACAATACTGTTACCTGGCTTGCTTTTTGGAGTGATCCTATCAATCCAAA 1816
Query 1733 AGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAGGA 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1817 AGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAAGA 1876
Query 1793 GAAGTATGAGAAA---A--A--CTA--TA----TA--GGGAGTATTAGAGCAGCATACAC 1837
||||||||||||| | | ||| || || |||||||||||||||||||||||
Sbjct 1877 GAAGTATGAGAAAGCGAGGAAGCTACATAACCATATAGGGAGTATTAGAGCAGCATACAC 1936
Query 1838 CAAAGATTTTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTTGCGACATATCTCAT 1897
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1937 CAAAGATTTTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTGGCAACATATCTCAT 1996
Query 1898 CGATAAGCTAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGG 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 CGATAAGCTAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGG 2056
Query 1958 TTGCTGTACATTGAAAGTAGGAAATGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGA 2017
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2057 TTGTTGTACATTGAAAGTAGGAAACGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGA 2116
Query 2018 CTTCCTTGGTAAGGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTA 2077
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 CTTCCTTGGTAAAGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTA 2176
Query 2078 TAAGGCAATTGGGCAGTTCCAAGCGGGAAAATCGAAAACCGATGATCTATTTGATGAGCT 2137
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2177 TAAGGCAATTGGGCAGTTCCAAGCAGGAAAATCGAAAACCGATGATCTCTTTGATGAGCT 2236
Query 2138 AGATACTTCAAAACTCAATGCTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGT 2197
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 AGATACTTCAAAACTCAATACTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGT 2296
Query 2198 CTTCCGTACATATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGA 2257
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 ATTCCGTACGTATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGA 2356
Query 2258 TGGTGACGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCAAACAAGGAGGTTGCTATCAT 2317
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2357 CGGTGACGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCGAACAAGGAGGTTGCTATCAT 2416
Query 2318 TTGTAACCATCAACGTACTGTGTCAAAATCTCACGGAGCACAAGTCGAGAAGCTGGCTGT 2377
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 2417 TTGTAACCATCAACGTACTGTCTCGAAATCTCACGGAGCACAAGTGGAGAAGCTGGCTGT 2476
Query 2378 GAAAATAGAAGAACTAAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAA 2437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 GAAAATAGAAGAACTAAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAA 2536
Query 2438 AAAAGGAAGAACACCATTAATGGGATCTGATGGAAAGAGAAAGAGGAACTTAACACCTGA 2497
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2537 GAAAGGAAGAACACCGTTAATGGGATCTGATGGAAAGAGAAAGAGGAACTTAACACCTGA 2596
Query 2498 AGCATTGGAGAAGAAGATAATGCAAACGCAAGGTAAGATCGAGAAGATGGAAAGGGATAT 2557
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2597 AGCATTGGAGAAGAAGATAATGCAAACGCAAGGTAAGATCGAGAAGATGGAAAGAGATAT 2656
Query 2558 GCAAACGAAGGAAGATATGAAAACCGTTGCATTGGGCACATCTAAGATCAATTACATGGA 2617
|||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 2657 GCAAACAAAAGAAGATATGAAAACTGTCGCATTGGGCACATCTAAGATCAACTACATGGA 2716
Query 2618 TCCTAGGATCACTGTTGCATGGTGCAAACGACACGATGTCCCCATTGAGAAGATATTTAA 2677
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2717 TCCTAGGATCACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAGATATTTAA 2776
Query 2678 CAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGACGTTGATCCTGAGTTCAGATTCTG 2737
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2777 CAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTTCAGATTCTG 2836
Query 2738 TTTAAGCAATGATGAATAAATACATTTTCGTTGAGGCCAGTT 2779
|| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 2837 TTCAAGTACCGATGAATAAATACATGTTCGTTGAGGCCAGTT 2878
> AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha
| chr5:22424577-22429502 REVERSE LENGTH=3077
Length=3077
Score = 1247 bits (675), Expect = 0.0
Identities = 1371/1700 (81%), Gaps = 76/1700 (4%)
Strand=Plus/Plus
Query 1061 GAAAGATTCTAAGTATTCGAAATCTTCAAAATCATTACC-T--TCTGGAGATGGGCAAAC 1117
||| || || || ||||| | ||||||||||||| ||| | ||||||||||||||||
Sbjct 1198 GAAGGACTCAAAATATTCCACGTCTTCAAAATCATCACCTTCCTCTGGAGATGGGCAAAA 1257
Query 1118 GAAATGGAAAACTCTAGAGCACAATGGTGTCATTTTTCCACCTTCATATAAGCGTCATGG 1177
|||||||| ||| | | |||||| ||||| || |||||||| |||| |||| ||||||
Sbjct 1258 GAAATGGACTACTTTGGTGCACAACGGTGTAATATTTCCACCGCCATACAAGCCTCATGG 1317
Query 1178 GGTTAAGATATTGTATC-A-GGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTT 1235
||||||| ||||| | | |||||| ||||||||| ||||| ||||||||||||||||
Sbjct 1318 CATTAAGATTTTGTA-CAAGGGGAAA-CCTGTTGACCTAACTATTGAACAAGAAGAGGTT 1375
Query 1236 GCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTACAATAAACC-AAAGTTCAGAGA 1294
|| ||||||||||| |||||||| || ||||| ||||| | |||||| || ||| | ||
Sbjct 1376 GCGACTATGTTTGCAGTGATGAGAGAGACAGATTATTATACTAAACCTCAATTTC-GGGA 1434
Query 1295 GAATTTCTGGAATGATTGGCGGAGACTACTTGGAAAGAACCATATGATTA-AAAATTTGG 1353
||||||||||||||| ||||| ||||| ||||| ||||| ||| ||| || | || ||||
Sbjct 1435 GAATTTCTGGAATGACTGGCGAAGACTGCTTGGCAAGAAACATGTGA-TACAGAAGTTGG 1493
Query 1354 ATGATTGTGACTTCACTCCCATATATGAATGGTATATACAGGAGAAGGAGACA-AAGAAA 1412
||||||||||||| |||||||||||||| ||| || | | ||||| |||| | ||||||
Sbjct 1494 ATGATTGTGACTTTACTCCCATATATGAGTGGCATTTGGAAGAGAAAGAGA-AGAAGAAA 1552
Query 1413 CTAATGA-CTGCAGAAGAG-AAAAGGATTTTGAAAGAGGAGAAATTAAAGCAGGAGGAGA 1470
| ||||| | |||| ||| |||| | |||||||||||||||| | ||||| |||||||
Sbjct 1553 CAAATGAGC-ACAGAGGAGAAAAAAG-CTTTGAAAGAGGAGAAAATGAAGCAAGAGGAGA 1610
Query 1471 AATACATGTGGGCTGTTCTTGATGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGC 1530
|||| |||||||||||| |||||||||||| |||| |||||| ||||||||||| || |
Sbjct 1611 AATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAAGATTGGTAATTTCAGAGTGGAAC 1670
Query 1531 CCCCTGGGTTGTTTC-GAGGCCGGGGAGAACATCCTAAGATGGGGAAACTGAAA-AAGCG 1588
| ||||| | |||| ||||||| ||||||||||| |||||||| ||||| ||| |||||
Sbjct 1671 CGCCTGGCCT-TTTCAGAGGCCGTGGAGAACATCCCAAGATGGGAAAACT-AAAGAAGCG 1728
Query 1589 GATTCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG-GCGCCTGTTCCAGAATGCC 1647
|| | ||| || || || || | || || || |||| | || ||| |||||||||| |
Sbjct 1729 TATCCATCCATGCGAGATCACCTTAAATATCGGGAAAG-GTGCTCCTATTCCAGAATGTC 1787
Query 1648 CTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAATACTGTTACCTGGCTTGCTT 1707
| || |||||||||||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 1788 CAATTGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAACACAGTCACCTGGCTAGCTT 1847
Query 1708 TTTGGAATGATCCTATCAATCCAAAAGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTT 1767
| ||| ||||||||| || |||||||| |||||||||||||| |||| |||| ||||||
Sbjct 1848 TCTGGGCTGATCCTATTAACCCAAAAGAATTCAAGTATGTATTTTTGGGAGCTGGCAGTT 1907
Query 1768 CGT-TG-AAGGGACAAAGCGACAAGGAGAAGTATGAG--A---A--AA----AC---T-A 1810
| | || ||||| | |||||||| |||||||| ||| | | || || | |
Sbjct 1908 C-TCTGAAAGGG-CTGAGCGACAAAGAGAAGTACGAGAAAGCTAGGAATCTTACGGATCA 1965
Query 1811 TATAGGGAGTATTAGAGCAGCATACACCAAAG-ATTTTAATAACAAGGATG-TAACAAAG 1868
||||| | ||| ||| || |||||||| ||| |||||| | |||||||| ||| || |
Sbjct 1966 TATAGATAATATAAGAACAACATACACC-AAGAATTTTACTGCCAAGGATGTTAA-AATG 2023
Query 1869 CGGCAAATAGCAGTTGCGACATATCTCATCGATAAGCTAGCCCTTAGGGCTGGAAATGAG 1928
||||||| || || |||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 2024 AGGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGCTTAGGGCTGGAAATGAG 2083
Query 1929 AAGGATGACGATGAGGCAGATACTGTTGGTTGCTGTACATTGAAAGTAGGAAATGTGGAG 1988
|||||||| |||||||| || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct 2084 AAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAAAAGTTGGAAATGTGGAG 2143
Query 1989 TGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTGGTAAGGACTCTATTCAGTATGTA 2048
||||||||||||||||| |||||||||| || ||||||||||| || || ||||||||
Sbjct 2144 TGTATTCCTCCAAATAAAATAAAGTTTGATTTTCTTGGTAAGGATTCAATCCAGTATGTG 2203
Query 2049 AACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAATTGGGCAGTTCCAAGCGGGAAAA 2108
|||||||| |||||||||||||| || || ||||| ||||| |||||||| |||||||||
Sbjct 2204 AACACAGTCGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGACAGTTCCAGGCGGGAAAA 2263
Query 2109 TCGAAAACCGATGATCTATTTGATGAGCTAGATACTTCAAAACTCAATGCTCATCTT-AA 2167
|| ||||| |||||||| ||||||||| |||| || ||||| ||||||||| || ||
Sbjct 2264 TCCAAAACAGATGATCTTTTTGATGAGTTAGACACAAGTAAACTGAATGCTCAT-TTGAA 2322
Query 2168 GGAGCTTATGGCTGGTCTCACAGCCAAAGTCTTCCGTACATATAATGCATCCATCACATT 2227
||| ||| || ||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 2323 GGAACTTGTGCCTGGTCTCACAGCTAAAGTATTCCGTACATATAATGCTTCCATCACTTT 2382
Query 2228 GGATTTAATGTTGAGTAAAGAAACCAGAGATGGTGACGTTCCTGAAAAAGTGGTGGTTTA 2287
|||| |||| ||||| ||||||||| |||||| || ||| || ||||| | || |||||
Sbjct 2383 GGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGATGTTACTCAAAAAATAGTAGTTTA 2442
Query 2288 TCAGCAAGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGTACTGTGTCAAA-AT 2346
|||| ||||||| ||||||||||| || || || || ||||| |||||||| ||||| |
Sbjct 2443 TCAGAAAGCAAATAAGGAGGTTGCCATAATCTGCAATCATCAGCGTACTGTATCAAAGA- 2501
Query 2347 CTCACGGAGCACAAGTCGAGAAGCTGGCTGTGAAAATAGAAGAACT-AAGGGAGCAAATA 2405
| || || || ||| | || || || ||| || |||||||||||| |||| || |
Sbjct 2502 CACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAACTCAAGG-AGGTTCTT 2560
Query 2406 AAAGAGCTGAATATTGATCTCGACAGGGCTAAAAAAGGAAGAAC-ACCATT--AATGGGA 2462
|||||||| || | | |||| ||| |||||||||| |||| ||| |||||| || ||
Sbjct 2561 AAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAA-AACCACCATTGGAA-GGT- 2617
Query 2463 TCTGATGGAAAGA-GAA-AGAGGAACTTA-ACACCTGAA-GCATTGGAGAAGAAGATAAT 2518
||||||||||||| || ||| | |||| | ||| || || | |||||||||||| |
Sbjct 2618 TCTGATGGAAAGAAGATTAGAAG--CTTAGA-ACCA-AACGCGTGGGAGAAGAAGAT--T 2671
Query 2519 GCA-AAC-GCAAG-G-TAAGATCGAGAAGATGGAAAGGGATATGCAAACGAAGGAAGA-T 2573
|| ||| | | | | |||||||||||| |||||| | || ||||| || || || || |
Sbjct 2672 GCTCAACAG-A-GTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAGGACT 2729
Query 2574 ATGAAAACCGTTGCATTGGGCACATCTAAGATCAATTACATGGATCCTAGGATCACTGTT 2633
||||||| || ||| ||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct 2730 -TGAAAACAGTGGCACTGGGCACGTCTAAGATCAACTACCTGGATCCTAGAATCACAGTT 2788
Query 2634 GCATGGTGCAAACGACACGATGTCCCCATTGAGAAGATATTTAACAAGTCTCTTCTGGCT 2693
|||||||||||||| || || || || || || |||||||| | |||||||||| |||
Sbjct 2789 GCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTGGAG 2848
Query 2694 AAGTTCGCTTGGGCAATGGA 2713
||||| || |||||||||||
Sbjct 2849 AAGTTTGCGTGGGCAATGGA 2868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138059427136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5