BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950188

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G25550.1 | Symbols:  | myb-like transcription factor family ...   263    1e-69
  AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN ...   207    6e-53
  AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 |...   202    3e-51
  AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5...   200    1e-50


> AT1G25550.1 | Symbols:  | myb-like transcription factor family 
protein | chr1:8976434-8978093 FORWARD LENGTH=1396
Length=1396

 Score =  263 bits (142),  Expect = 1e-69
 Identities = 313/387 (81%), Gaps = 46/387 (12%)
 Strand=Plus/Plus

Query  164   TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA  223
             ||||||||| ||||| ||||||||||||||  |  |  ||||||||||||||||||||||
Sbjct  909   TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA  962

Query  224   TGACGAAGTTAAAAGCCATTTAC------AT--ATTGCACACAAGAAGACCAGCTACTCC  275
             ||||||||||||||| |||||||      ||  |||||| ||||||||||||||||||||
Sbjct  963   TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC  1022

Query  276   GGTAGTAACAAACGGTGGAGAAA-TCCACAACAACTACAATTCATGGTGGTGGAAGGAAT  334
             ||||||||  | |||||| |||| |||||||||||  || || |||||| ||||||| ||
Sbjct  1023  GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT  1082

Query  335   TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------  386
             |||||| | | || ||||||||||| ||||||||||||||||||| || |||||      
Sbjct  1083  TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA  1140

Query  387   --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA  441
               |   ||||||||| |||||||||||||||| | | ||| | |||||||| || | |||
Sbjct  1141  CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA  1198

Query  442   CATCTTCTAC-AC-ACAC-CACACCG----T-CTTCCTCTATCATAGATA----GTTCAC  489
             |||||||||| || |||| ||||||     | |||||||| ||||| |||    ||| ||
Sbjct  1199  CATCTTCTACTACTACACACACACCACACCTTCTTCCTCTTTCATAAATATATAGTT-AC  1257

Query  490   -GATTTGTATGAAAATTGGTTTTCTTC  515
              |||||||||||||||| |||||||||
Sbjct  1258  CGATTTGTATGAAAATTTGTTTTCTTC  1284


> AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN 
81.4 | chr5:22677451-22680152 REVERSE LENGTH=2336
Length=2336

 Score =  207 bits (112),  Expect = 6e-53
 Identities = 133/143 (93%), Gaps = 2/143 (1%)
 Strand=Plus/Plus

Query  24   GCTTTGGACAAGATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGCCT  83
            |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  209  GCTTTGGACAAGATTAGGTTCGAGTCCTTGACGGATAAGAGCAAGCTCGATGGTCAGCCT  268

Query  84   GAGCTATTCCTTCATATCATTCCCGACAAGACTAACAACACCTTGAACATTATCGATAGT  143
            ||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct  269  GAGCTTTTCATTCATATCATTCCGGACAAGACTAACAACACCTTGACCATTATCGATAGT  328

Query  144  G-TGATTGGGATGACTAAGGCTG  165
            | | ||||||||||| |||||||
Sbjct  329  GGT-ATTGGGATGACCAAGGCTG  350


> AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 
| heat shock protein 81-3 | chr5:22681305-22684129 FORWARD 
LENGTH=2423
Length=2423

 Score =  202 bits (109),  Expect = 3e-51
 Identities = 133/144 (92%), Gaps = 4/144 (3%)
 Strand=Plus/Plus

Query  24   GCTTTGGACAAGATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGCCT  83
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct  229  GCTTTGGACAAGATTAGGTTTGAGTCCTTGACAGACAAGAGCAAGCTCGATGGTCAGCCA  288

Query  84   GAGCTATTCCTTCATATCATTCCCGACAAGACTAACAACACCTTGAAC-ATTATCGATAG  142
            ||||| ||| |||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  289  GAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGA-CGATTATCGATAG  347

Query  143  TG-TGATTGGGATGACTAAGGCTG  165
            || | ||||||||||| |||||||
Sbjct  348  TGGT-ATTGGGATGACCAAGGCTG  370


> AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5:22686832-22689471 
FORWARD LENGTH=2316
Length=2316

 Score =  200 bits (108),  Expect = 1e-50
 Identities = 133/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  22   TGGCTTTGGACAAGATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGC  81
            ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct  300  TGGCTTTGGACAAGATTAGATTCGAGTCCTTGACGGACAAGAGCAAGCTCGATGGTCAGC  359

Query  82   CTGAGCTATTCCTTCATATCATTCCCGACAAGACTAACAACACCTTGAACATTATCGATA  141
            ||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct  360  CTGAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGACCATTATTGATA  419

Query  142  GTG-TGATTGGGATGACTAAGGCTG  165
            ||| | ||||| ||||| |||||||
Sbjct  420  GTGGT-ATTGGCATGACCAAGGCTG  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5