BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950201
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55500.1 | Symbols: ATXYLT, XYLT | beta-1,2-xylosyltransfera... 2468 0.0
> AT5G55500.1 | Symbols: ATXYLT, XYLT | beta-1,2-xylosyltransferase
| chr5:22482160-22484631 FORWARD LENGTH=2045
Length=2045
Score = 2468 bits (1336), Expect = 0.0
Identities = 1544/1640 (94%), Gaps = 32/1640 (2%)
Strand=Plus/Plus
Query 11 gagagagagaTATGAGTAAACGGAATCCGAAGATTCTGAAGATTTTTCTGTATATGTTAC 70
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GAGAGAGAGAGATGAGTAAACGGAATCCGAAGATTCTGAAGATTTTTCTGTATATGTTAC 275
Query 71 TTCTCAACTCTCTCTTTCTCATCATCTACTTCGTTTTTCACTCATCGTCGTTTTCACCGG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTCTCAACTCTCTCTTTCTCATCATCTACTTCGTTTTTCACTCATCGTCGTTTTCACCGG 335
Query 131 AGCAGTCACATCCTCAT-ATACCTTTACGGTTTCACGTTTCAGTGAATAACCAATCGGCG 189
|||||||||| |||| | ||| | ||| |||||||||||||||||||||||||||
Sbjct 336 AGCAGTCACAGCCTCCTCATA--TATAC-----CACGTTTCAGTGAATAACCAATCGGCG 388
Query 190 ATTCAGAAACCGTGGCCGATCTTACCTTCTTACCTCCCATGGACGCCGCCGCAGAGGAAT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ATTCAGAAACCGTGGCCGATCTTACCTTCTTACCTCCCATGGACGCCGCCGCAGAGGAAT 448
Query 250 CTACCAACTGGCTCCTGCGAAGGCTACTTCGGGAATGGATTTACAAAGAGAGTTGACTTC 309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 449 CTACCAACTGGCTCCTGCGAAGGTTACTTCGGGAATGGATTTACAAAGAGAGTTGACTTC 508
Query 310 CTTAAGCC-----------GAGGA-GAGAAGGAAGCTGGTTTCGTTGTTTCTACAGTGAG 357
|||||||| ||||| |||||||||||||||| || ||||| |||||||||
Sbjct 509 CTTAAGCCGAGGATTGGAGGAGGAGGAGAAGGAAGCTGGTTCCGATGTTTTTACAGTGAG 568
Query 358 ACGTTACAGAGTTCGATTTGTGAAGGAAGGAATCTGAGAATGGTTCCGGATCGGATTGTT 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ACATTACAGAGTTCGATTTGTGAAGGAAGGAATCTGAGAATGGTTCCGGATCGGATTGTT 628
Query 418 ATGTCGAGAGGAGGTGAGAAGTTAGAGGAAGTTATGGGGAGGAAAGAGGAGGAAGAGCTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 629 ATGTCGAGAGGAGGTGAGAAGTTAGAGGAAGTTATGGGGAGGAAAGAGGAGGAGGAGCTT 688
Query 478 CCTGAGTTTCGACAAGGTGCGTTTGAGGTGGCGGAAGAGGTTTCTTCACGGTTAGGTTTT 537
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 689 CCTGCGTTTCGACAAGGTGCGTTTGAGGTAGCGGAAGAGGTTTCTTCACGGTTAGGTTTT 748
Query 538 AAGAGACACCGTCGTTTTGGTggaggagaaggaggaggaggaggCAGTGTGGTTTCTCGG 597
||||||||||||||||||||| | | |||| || |||||| |||| ||||||||||
Sbjct 749 AAGAGACACCGTCGTTTTGGT----G-G-AGGA-GA--AGGAGGTAGTGCGGTTTCTCGG 799
Query 598 CGGCTGGTGAATGATGAGATGCTGAATGAGTATATTCAAGAAGGTGGAATTGATAGACAT 657
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 800 CGGCTGGTGAATGATGAGATGTTGAATGAATATATGCAAGAAGGTGGAATTGATAGACAT 859
Query 658 ACAATGAGAGATTTGGTTGCTTCGATTCGTGCTGTTGATACCAAAGATTTCGTTTGTGAA 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 860 ACAATGAGAGATTTGGTTGCTTCGATTCGTGCTGTTGATACCAATGATTTCGTTTGTGAA 919
Query 718 GAGTGGGTGGAGGAACCAACCTTGCTTGTCACTAGATTTGAGTATGCAAATCTCTTCCAT 777
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 920 GAGTGGGTGGAGGAACCGACCTTGCTTGTCACTAGATTCGAGTACGCAAATCTCTTCCAT 979
Query 778 ACCGTGACGGATTGGTATAGCGCTTATGTTTCCTCTAGAGTCACCGGTTTGCCTAATCGA 837
|| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 980 ACTGTGACAGATTGGTATAGTGCCTATGTTTCGTCTAGAGTCACCGGTTTGCCTAATCGA 1039
Query 838 CCACACGTTGTTTTCGTTGATGGACACTGCACGACGCAGCTAGAAGAAACATGGACAGCT 897
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1040 CCTCACGTTGTTTTCGTTGACGGACACTGCACGACGCAGCTAGAAGAAACATGGACAGCT 1099
Query 898 TTGTTTTCCGGAATTAGATACGCAAAGAATTTCACCAAACCGGTTTGTTTCCGCCATGCG 957
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1100 TTGTTTTCCGGAATCAGATACGCAAAGAACTTCACCAAACCGGTTTGTTTCCGCCACGCG 1159
Query 958 ATTCTTTCACCATTGGGATACGAAACTGCGCTTTTTAAAGGCTTGACGGGAGAAATAGAT 1017
|||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||
Sbjct 1160 ATTCTTTCACCATTGGGATACGAAACCGCTCTTTTTAAAGGCTTGTCCGGAGAAATAGAC 1219
Query 1018 TGCAATGGAGAATCAGCTCACAATCTGTGGCAAAACCCGGACGATAAAAGGACTGCGAGG 1077
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TGCAAGGGAGATTCAGCTCACAATCTGTGGCAAAACCCGGACGATAAAAGGACTGCGAGG 1279
Query 1078 ATATCAGAGTTTGGCGAAATGATCAGAGCAGCTTTCGGATTTCCTGTCAACAGACACCGC 1137
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1280 ATATCAGAGTTTGGTGAAATGATCAGAGCAGCTTTCGGGTTGCCTGTCAATAGACACCGC 1339
Query 1138 TCATTAGAAAAACCGCcatcatcatcatcatcatc--C-TCTGTTCATAACGTTCTCTTT 1194
||||||||||| |||| |||||||||||||||||| | || ||| |||| ||||| |||
Sbjct 1340 TCATTAGAAAAGCCGCTATCATCATCATCATCATCAGCCTCAGTTTATAATGTTCTTTTT 1399
Query 1195 GTCCGCCGTGAAGATTACTTAGCCCATCCTCGTCATGGCGGTAAAGTCCAGTCTCGGCTC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 GTCCGCCGTGAAGATTACTTAGCCCATCCTCGTCATGGCGGTAAAGTCCAGTCTCGGCTC 1459
Query 1255 ATCAACGAGGAAGAAGTGTTCGACTCGTTGCATCATTGGGTCGCGACTGGCTCCACCGGT 1314
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1460 ATCAATGAGGAAGAAGTGTTCGACTCGTTGCATCATTGGGTTGCAACTGGGTCCACCGGT 1519
Query 1315 CTGACCAAATGTGGGATTAACCTTGTGAATGGCTTGCTCGCACACATGTCAATGAAAGAT 1374
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1520 CTGACCAAATGCGGGATTAACCTTGTGAATGGCTTGCTTGCACACATGTCAATGAAAGAT 1579
Query 1375 CAAGTCCGAGCCATCCAAGATGCGTCAGTGATCATAGGAGCTCATGGAGCAGGACTCACT 1434
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1580 CAAGTCCGAGCCATTCAAGATGCTTCAGTGATCATAGGAGCTCATGGAGCAGGACTGACT 1639
Query 1435 CACATTGTATCTGCAACACCAAACACAACGATATTTGAGATAGTGAGCGTCGAGTTTCAG 1494
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1640 CACATTGTCTCTGCAACACCAAACACAACGATATTTGAGATAATAAGCGTCGAGTTTCAG 1699
Query 1495 AGACCTCATTTCGAGCTCATAGCTAAGTGGAAAGGATTGGAGTATCATGCGATGCATCTG 1554
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1700 AGACCTCATTTCGAGCTTATAGCTAAGTGGAAAGGATTGGAGTATCACGCGATGCATCTG 1759
Query 1555 GCGAACTCACGAGCGGAACCAACGGCTGTGATTGAGAAGTTAAAGGAGATCATGAAGAGC 1614
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1760 GCGAACTCACGAGCGGAACCAACGGCTGTGATTGAGAAGTTAACGGAGATCATGAAGAGC 1819
Query 1615 CTTGGCTGCTAAAGAAAAAA 1634
||||||||||||||| ||||
Sbjct 1820 CTTGGCTGCTAAAGACAAAA 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5