BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950202

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55507.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   279    8e-75


> AT5G55507.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:22485099-22485712 REVERSE LENGTH=614
Length=614

 Score =  279 bits (151),  Expect = 8e-75
 Identities = 261/308 (85%), Gaps = 31/308 (10%)
 Strand=Plus/Plus

Query  1    AACATGCTCAATTAATCCACATGGATTATGGTCACGTTACTCCTCCTCCTCACGCCAATT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  
Sbjct  132  AACATGCTCAATTAATCCACATGGATTATGGTCACGTTACTCCTCCTCCTC-C-TCAAAA  189

Query  61   CTCTAAATCTGCCGCCACCGTGGCCACAATTA-TCGCCGATGTATC-A-A----TCGCCG  113
            || |   |||   ||||||||||| |||| || ||||||||||||| | |    ||| ||
Sbjct  190  CT-T---TCT---GCCACCGTGGCAACAA-TATTCGCCGATGTATCAACAGGTGTCGGCG  241

Query  114  TC---GGCGCC-A---C-C-GTATATGAACTACCAACAATTTCCGTTTACCG---AACAA  161
             |   | | || |   | | |||||||||||||||||||||||||| ||| |   |||||
Sbjct  242  CCAATGTCTCCGATGTCTCAGTATATGAACTACCAACAATTTCCGTATACTGAACAACAA  301

Query  162  CAGCCTCCTGTGACGTATCCGTATTATTATTATCCTTATTACGTACCGGAAATGTTGTAT  221
            || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  302  CAACCTCCTGCGACGTATCCGTATTATTATTATCCTTATTACGTACCGGAAATGTGGTAT  361

Query  222  TCTCCGCCGCCGCAGATACCGACGCGAGACGGAGTTACCGGCGAGCCACAGTGTCGGATT  281
            ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  362  TCTTCGCCGCCGCAGTTACCGACGCGAGACGGCGTTACCGGCGAGCCACAGTGTCGGATT  421

Query  282  CTT-TGAA  288
             || ||||
Sbjct  422  -TTGTGAA  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5