BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950221

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55650.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   628    1e-179


> AT5G55650.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:22536360-22536824 
FORWARD LENGTH=465
Length=465

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 432/474 (91%), Gaps = 15/474 (3%)
 Strand=Plus/Plus

Query  21   ATGGTGGAAAAATCTGATGATGATGAAAAGCATTTTTCTTGGTGTTGCTTTCTTTTACAG  80
            ||||||||||||||   ||||||||||||||||||| || ||||||||||||||| ||||
Sbjct  1    ATGGTGGAAAAATC---TGATGATGAAAAGCATTTTACTCGGTGTTGCTTTCTTTCACAG  57

Query  81   ATGTCATTGCTGTTTTTTCTTGTAACCCTAATTTCAGCTGTAGCTTTCCTCTCTTTCTTG  140
             ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  58   CTGTCACTGCTGTTTTTTCTTGTAACCCTAATTTCATCTGTAGCTTTCCTCTGTTTCTTG  117

Query  141  AACTCTCATGGAGTCTCCTCTCTC-CTAATAACCATGGCAATCTTGTTCTTCTCCACTTC  199
            |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||| ||||
Sbjct  118  AACTCTCAAGGAGTCTCCTCTCTCAC-AATAACCATGGCAATCTTGTTCGTCTCCTCTTC  176

Query  200  TGTTTTCTT-TCTAAGATTCTTTAA-GAAGAAGACAAAACTATGTTTGGCTGAGAGATCC  257
            ||||||||| | || || |||| || ||| ||||||| |||||||||||||||| | |||
Sbjct  177  TGTTTTCTTGT-TACGAATCTTCAAGGAA-AAGACAAGACTATGTTTGGCTGAGGGGTCC  234

Query  258  CAAGAAGAAGGC--C-atgatgatgatgaggatgatgaagatgGTCTCATTGAGATTGCT  314
            |||| |||||||  | || |||| ||||| |||||||| ||||||||||||||||||| |
Sbjct  235  CAAGGAGAAGGCTACGATTATGAAGATGATGATGATGATGATGGTCTCATTGAGATTGAT  294

Query  315  CTTGTGAGTGAAGAAGAAGCAGAGACTATAGAGGCAATGAGAAACATTAATGAAAGTCGA  374
            |||||||  |  ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  295  CTTGTGA--G-CGAAGAAGCAGAGACTATAGAGGCAATGAGAAACATTAATCAAAGTCGA  351

Query  375  Cagagaattaggattgaagaagaacaagaagaagagattgatgatgtgaatatggaagaa  434
            | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  352  CTGAGAATTAGGATTGAAGAAGAACAAGAAGAAGATATTGATGATGTGAATATGGAAGAA  411

Query  435  gatAATCTTATTGAGATTGATATTTCCATTGGATCTATTAAAAGACGAATGTAA  488
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  412  GATAATCTTATTGAGATTGATATTTCCATTGGATCCATTAAAAGACGAATGTAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5