BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950231

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55750.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   401    3e-111


> AT5G55750.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:22564801-22566021 REVERSE LENGTH=565
Length=565

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 317/361 (88%), Gaps = 24/361 (7%)
 Strand=Plus/Plus

Query  210  CTCCACAGTCTCCACAGTCTTCACCGCCTCCACCGTCTTCACAGTCTTCACCACCTTCAC  269
            |||||| ||||||||||| |||||| || |||||| ||||||||   |      ||||||
Sbjct  197  CTCCACCGTCTCCACAGTATTCACCACCCCCACCGCCTTCACAG---T------CTTCAC  247

Query  270  CGCCACGTTCTCGCTGCCCTCCTGTTCCGACGACAGGCTGTTG----CAACCA--A---C  320
            |||||||||||||||||||||||||||||||||||||||||||    ||||||  |   |
Sbjct  248  CGCCACGTTCTCGCTGCCCTCCTGTTCCGACGACAGGCTGTTGCAACCAACCACCAGGTC  307

Query  321  CACCACCTTCGACGATGTATTCTCCTCCGTATCCTTACTTTTATACTCCTCCTTATCCTT  380
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  308  CACCACCTTCGACGATGTATTCTCCTCCGTATCCTTATTTTTATACTCCTCCTTATCCTT  367

Query  381  ACGGTGCTATCGGCGGAGGGGGACAAGGCGGTGGCGGTCAAGGAGGAGGAG-A--AG---  434
            ||||| |||| |||||||||||||||||||||||||| ||||||||||||| |  ||   
Sbjct  368  ACGGTACTATTGGCGGAGGGGGACAAGGCGGTGGCGGCCAAGGAGGAGGAGGAGGAGGAG  427

Query  435  CCGGAGGTGGTACAACCGGTTCAGCGGTGGCTTACTATTCCTCTTCCATGCCCGTACATC  494
            ||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||| || 
Sbjct  428  CCGAAGGCGGTACAACCGGTTCAGCGATGGCTTACTATTCCTCTTCCATTCCCGTATATG  487

Query  495  TCTTGATGCTTGTGTTAGCTAATGCTTTTATTCTCTTTTAGGGCATACATAGTTTTTAGA  554
            | |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||
Sbjct  488  TTTTGATGCTTGTGTTAGCTAATGCTTTTATTGTCTTTTAGGTCATACATAGGTTTCAGA  547

Query  555  T  555
            |
Sbjct  548  T  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5