BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950240

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55856.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   399    8e-111


> AT5G55856.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:22607927-22608640 FORWARD LENGTH=294
Length=294

 Score =  399 bits (216),  Expect = 8e-111
 Identities = 271/295 (92%), Gaps = 14/295 (5%)
 Strand=Plus/Plus

Query  136  ATGTCGACGTCTGACAAGAAACCGTTGATTCCGTCGTCAC--AT-A---TC------AAA  183
            |||||| |||||||||||||||||||||||||||||||||  || |   ||      |||
Sbjct  1    ATGTCGTCGTCTGACAAGAAACCGTTGATTCCGTCGTCACATATCACCGTCAAAGTTAAA  60

Query  184  AATCAGGATGACATATGTGTGTACTTCCGGATTAAGAGGGACGTTGAGCTTCGTAAGATG  243
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   AATCAGGACGACATATGTGTGTACTTCCGGATTAAGAGGGACGTCGAGCTTCGTAAGATG  120

Query  244  ATGCATGCATATTCCGCA-AAAGTTGGAGTAGAAATGTCTACTCTAAGGTTCCTCTTCGA  302
            ||||||||||| || | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct  121  ATGCATGCATACTCTG-ACAAAGTTGGAGTAGAAATGTCTACTCTAAGGTTTCTCTTCGA  179

Query  303  TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAGGATGAAGACGA  362
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  180  TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAAGACGAAGACGA  239

Query  363  AATCGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCACCATTAA  417
            ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  240  AATAGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCGCCATTAA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5