BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950240 Length=437 Score E Sequences producing significant alignments: (Bits) Value AT5G55856.1 | Symbols: | Ubiquitin-like superfamily protein | ... 399 8e-111 > AT5G55856.1 | Symbols: | Ubiquitin-like superfamily protein | chr5:22607927-22608640 FORWARD LENGTH=294 Length=294 Score = 399 bits (216), Expect = 8e-111 Identities = 271/295 (92%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 136 ATGTCGACGTCTGACAAGAAACCGTTGATTCCGTCGTCAC--AT-A---TC------AAA 183 |||||| ||||||||||||||||||||||||||||||||| || | || ||| Sbjct 1 ATGTCGTCGTCTGACAAGAAACCGTTGATTCCGTCGTCACATATCACCGTCAAAGTTAAA 60 Query 184 AATCAGGATGACATATGTGTGTACTTCCGGATTAAGAGGGACGTTGAGCTTCGTAAGATG 243 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 AATCAGGACGACATATGTGTGTACTTCCGGATTAAGAGGGACGTCGAGCTTCGTAAGATG 120 Query 244 ATGCATGCATATTCCGCA-AAAGTTGGAGTAGAAATGTCTACTCTAAGGTTCCTCTTCGA 302 ||||||||||| || | | |||||||||||||||||||||||||||||||| |||||||| Sbjct 121 ATGCATGCATACTCTG-ACAAAGTTGGAGTAGAAATGTCTACTCTAAGGTTTCTCTTCGA 179 Query 303 TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAGGATGAAGACGA 362 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 180 TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAAGACGAAGACGA 239 Query 363 AATCGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCACCATTAA 417 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 240 AATAGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCGCCATTAA 294 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20760580337 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5